/// <summary>
/// This method renders the single line report for BLAST hits.
/// </summary>
/// <param name="results">BLAST hits</param>
private void RenderSingleLineReport(IList <BlastResult> results, IBlastServiceHandler blastService, string databaseName)
{
this.lstSingleLineReport.ItemsSource = null;
this.lstSingleLineReport.Items.Clear();
this.blastResultCollator.Clear();
this.Focus();
foreach (BlastResult result in results)
{
foreach (BlastSearchRecord record in result.Records)
{
if (null != record.Hits &&
0 < record.Hits.Count)
{
foreach (Hit hit in record.Hits)
{
if (null != hit.Hsps &&
0 < hit.Hsps.Count)
{
foreach (Hsp hsp in hit.Hsps)
{
BlastResultCollator blast = new BlastResultCollator();
blast.Uri = BlastHitUrlResolver.ResolveUrl(hit.Id, blastService, databaseName);
blast.Alignment = hsp.AlignmentLength;
blast.Bit = hsp.BitScore;
blast.EValue = hsp.EValue;
blast.Identity = hsp.IdentitiesCount;
blast.Length = hit.Length;
blast.QEnd = hsp.QueryEnd;
blast.QStart = hsp.QueryStart;
blast.QueryId = record.IterationQueryId;
blast.SEnd = hsp.HitEnd;
blast.SStart = hsp.HitStart;
blast.SubjectId = hit.Id;
blast.Positives = hsp.PositivesCount;
blast.QueryString = hsp.QuerySequence;
blast.SubjectString = hsp.HitSequence;
blast.Accession = hit.Accession;
blast.Description = hit.Def;
blast.Gaps = hsp.Gaps;
this.blastResultCollator.Add(blast);
}
}
}
}
}
}
this.lstSingleLineReport.ItemsSource = this.blastResultCollator;
// Invoke the Silvermap
if (this.blastResultCollator.Count > 0 || this.webServiceReportTab.SelectedIndex == 1)
{
this.silverMapControl.InvokeSilverMap(this.blastResultCollator);
}
}
/// <summary>
/// Initializes a new instance of the PairwiseSequenceAlignment class.
/// </summary>
/// <param name="blastResult">
/// Blast result for which we are displaying Pairwise sequence alignment report.
/// </param>
public PairwiseSequenceAlignment(BlastResultCollator blastResult)
{
this.InitializeComponent();
// Hnadkes the "Esc" key event and closes the dialog.
this.PreviewKeyUp += new System.Windows.Input.KeyEventHandler(this.OnDialogKeyUp);
this.Owner = Application.Current.MainWindow;
if (blastResult != null)
{
this.blastResult = blastResult;
this.Display();
}
}
/// <summary>
/// This method listens to the key down on the ListViewItem and if thekey pressed is the "Enter Key"
/// , then it displays the Pairwise sequence alignment report.
/// </summary>
/// <param name="sender">ListView instance.</param>
/// <param name="e">Event Data.</param>
private void OnListViewKeyUp(object sender, KeyEventArgs e)
{
if (e.Key == Key.Enter)
{
DependencyObject dep = (DependencyObject)e.OriginalSource;
if (dep != null)
{
BlastResultCollator item = this.lstSingleLineReport.ItemContainerGenerator.ItemFromContainer(dep) as BlastResultCollator;
if (item != null)
{
BlastPane.RenderPairwiseSequenceAlignment(item);
}
}
}
}
/// <summary>
/// This method listens to the double click on the List view
/// and if the a ListView item has been clicked, then it displays
/// the Pairwise sequence alignment report.
/// </summary>
/// <param name="sender">ListView instance</param>
/// <param name="e"> Event data.</param>
private void OnListViewDoubleClick(object sender, MouseButtonEventArgs e)
{
DependencyObject dep = (DependencyObject)e.OriginalSource;
while ((dep != null) && !(dep is ListViewItem))
{
dep = VisualTreeHelper.GetParent(dep);
}
if (dep == null)
{
return;
}
BlastResultCollator item = this.lstSingleLineReport.ItemContainerGenerator.ItemFromContainer(dep) as BlastResultCollator;
if (item != null)
{
BlastPane.RenderPairwiseSequenceAlignment(item);
}
}
/// <summary>
/// This method renders the multiple line report for BLAST hits.
/// </summary>
/// <param name="blastResult">BLAST hits</param>
private static void RenderPairwiseSequenceAlignment(BlastResultCollator blastResult)
{
PairwiseSequenceAlignment alignment = new PairwiseSequenceAlignment(blastResult);
alignment.ShowDialog();
}
