public InvalidCifProcessingImageGenerationFixture(OsdrTestHarness harness)
{
FileId = harness.ProcessRecordsFile(harness.JohnId.ToString(), "InvalidImageGeneration.cif", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }
}).Result;
}
public ReadEventsBackwardAsyncFixture(OsdrTestHarness harness)
{
FileId = harness.ProcessRecordsFile(harness.JohnId.ToString(), "Aspirin.mol", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }
}).Result;
}
public InvalidJdxProcessingFixture(OsdrTestHarness harness)
{
FileId = harness.ProcessRecordsFile(harness.JohnId.ToString(), "13Csample.jdx", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }
}).Result;
}
public PdfProcessingFixture(OsdrTestHarness harness)
{
FileId = harness.ProcessFile(harness.JohnId.ToString(), "Abdelaziz A Full_manuscript.pdf", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }
}).Result;
}
public ImageJpgProcessingFixture(OsdrTestHarness harness)
{
FileId = harness.ProcessFile(harness.JohnId.ToString(), "computer-humor-computer-science.jpg", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }
}).Result;
}
public CsvProcessingFixture(OsdrTestHarness harness)
{
FileId = harness.ProcessFile(harness.JohnId.ToString(), "FocusSynthesis_InStock.csv", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }
}).Result;
}
public PredictPropertiesInvalidCaseFixture(OsdrTestHarness harness)
{
FolderId = harness.PredictProperties("invalid case", "combined lysomotrophic.sdf", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }
}).Result;
}
public InvalidSdfProcessingFixture(OsdrTestHarness harness)
{
FileId = harness.ProcessRecordsFile(harness.JohnId.ToString(), "invalid_sdf_with_20_records_where_first_and_second_are_invalid.sdf", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }
}).Result;
}
public static void WaitMetadataUpdated(this OsdrTestHarness harness, Guid id)
{
if (!harness.Received.Select <Generic.Domain.Events.Files.MetadataPersisted>(m => m.Context.Message.Id == id).Any())
{
throw new TimeoutException();
}
}
public SdfProcessingWithOneValidAndOneInvalidRecordsFixture(OsdrTestHarness harness)
{
FileId = harness.ProcessRecordsFile(harness.JohnId.ToString(), "test_solubility.sdf", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }
}).Result;
}
public ValidCdxProcessingFixture(OsdrTestHarness harness)
{
FileId = harness.ProcessRecordsFile(harness.JohnId.ToString(), "125_11Mos.cdx", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }
}).Result;
}
public TrainOneModelAndFailBeforeTrainingFixture(OsdrTestHarness harness)
{
FolderId = harness.TrainModel(harness.JohnId.ToString(), "drugbank_10_records.sdf", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }, { "case", "fail before starting training" }
}).Result;
}
public InvalidRxnProcessingFixture(OsdrTestHarness harness)
{
FileId = harness.ProcessRecordsFile(harness.JohnId.ToString(), "empty.rxn", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }
}).Result;
}
public ValidSdfProcessingFixture(OsdrTestHarness harness)
{
FileId = harness.ProcessRecordsFile(harness.JohnId.ToString(), "drugbank_10_records.sdf", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }
}).Result;
}
public MsWordProcessingFixture(OsdrTestHarness harness)
{
FileId = harness.ProcessFile(harness.JohnId.ToString(), "Developing Standard Approaches for Curating Small Molecule Pharmaceuticals_Jan18_2013.doc", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }
}).Result;
}
public static void WaitWhileCategoryTreeNodeDeletePersisted(this OsdrTestHarness harness, Guid nodeId)
{
if (!harness.Received.Select <CategoryTreeNodeDeletePersisted>(m => m.Context.Message.NodeId == nodeId).Any())
{
throw new TimeoutException();
}
}
public ValidMolProcessingFixture(OsdrTestHarness harness)
{
FileId = harness.ProcessRecordsFile(harness.JohnId.ToString(), "Aspirin.mol", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }
}).Result;
}
public ValidJdxProcessingFixture(OsdrTestHarness harness)
{
FileId = harness.ProcessRecordsFile(harness.JohnId.ToString(), "2-Methyl-1-Propanol.jdx", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }
}).Result;
}
public InvalidCifProcessingFixture(OsdrTestHarness harness)
{
FileId = harness.ProcessRecordsFile(harness.JohnId.ToString(), "1100110_modified.cif", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }
}).Result;
}
public TrainOneValidModelWithFailedOptimizationFixture(OsdrTestHarness harness)
{
FolderId = harness.TrainModel(harness.JohnId.ToString(), "combined lysomotrophic.sdf", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }, { "case", "train model with failed optimization" }
}).Result;
}
public TrainOneModelAndFailDuringTheTrainingFixture(OsdrTestHarness harness)
{
FolderId = harness.TrainModel(harness.JohnId.ToString(), "drugbank_10_records.sdf", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }, { "case", "train one model and fail during the training" }
}).Result;
}
public TrainOneValidModelFixture(OsdrTestHarness harness)
{
FolderId = harness.TrainModel(harness.JohnId.ToString(), "combined lysomotrophic.sdf", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }, { "case", "valid one model" }
}).Result;
}
public ArchiveGzProcessingFixture(OsdrTestHarness harness)
{
FileId = harness.ProcessFile(harness.JohnId.ToString(), "IMG_0109.gz", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }
}).Result;
}
//public static async Task<bool> DeleteFolder(this BusTestHarness harness, Guid id, Guid userId, int expectedVersion = 0)
//{
// await harness.Bus.Publish<DeleteFolder>(new
// {
// Id = id,
// UserId = userId,
// ExpectedVersion = expectedVersion
// });
// return await harness.WaitWhileAllProcessed();
//}
//public static async Task<bool> DeleteFile(this BusTestHarness harness, Guid id, Guid userId, int expectedVersion = 0)
//{
// await harness.Bus.Publish<DeleteFile>(new
// {
// Id = id,
// UserId = userId,
// ExpectedVersion = expectedVersion
// });
// return await harness.WaitWhileAllProcessed();
//}
//public static async Task<bool> DeleteRecord(this BusTestHarness harness, Guid id, Guid userId, int expectedVersion = 0)
//{
// await harness.Bus.Publish<DeleteRecord>(new
// {
// Id = id,
// UserId = userId,
// ExpectedVersion = expectedVersion
// });
// return await harness.WaitWhileAllProcessed();
//}
public static void WaitWhileBlobLoaded(this OsdrTestHarness harness, Guid blobId)
{
if (!harness.Received.Select <BlobLoaded>(m => m.Context.Message.BlobInfo.Id == blobId).Any())
{
throw new TimeoutException();
}
}
public static async Task <Guid> PredictProperties(this OsdrTestHarness harness, string bucket, string fileName, IDictionary <string, object> metadata = null)
{
var blobId = await harness.JohnBlobStorageClient.AddResource(bucket, fileName, metadata);
Guid predictionFolderId = Guid.NewGuid();
Guid correlationId = Guid.NewGuid();
Guid modelBlobId = Guid.NewGuid();
await harness.BusControl.Publish(new CreatePrediction(
id : predictionFolderId,
correlationId : correlationId,
folderId : predictionFolderId,
datasetBlobId : blobId,
datasetBucket : bucket,
modelBlobId : modelBlobId,
modelBucket : harness.JohnId.ToString(),
userId : harness.JohnId
));
if (!harness.Received.Select <MachineLearning.Sagas.Events.PropertiesPredictionFinished>(m => m.Context.Message.Id == predictionFolderId).Any())
{
throw new TimeoutException();
}
return(predictionFolderId);
}
public static async Task <Guid> CreateUser(this OsdrTestHarness harness, string displayName, string firstName, string lastName, string loginName, string email, string avatar, Guid userId)
{
Guid id = NewId.NextGuid();
await harness.CreateUser(id, displayName, firstName, lastName, loginName, email, avatar, userId);
return(id);
}
public ImageJpgProcessingFixture(OsdrTestHarness harness)
{
BlobId = harness.JohnBlobStorageClient.AddResource(harness.JohnId.ToString(), "computer-humor-computer-science.jpg", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }
}).Result;
FileId = harness.WaitWhileFileProcessed(BlobId);
}
public ValidCdxProcessingFixture(OsdrTestHarness harness)
{
BlobId = harness.JohnBlobStorageClient.AddResource(harness.JohnId.ToString(), "125_11Mos.cdx", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }
}).Result;
FileId = harness.WaitWhileRecordsFileProcessed(BlobId);
}
public ArchiveGzProcessingFixture(OsdrTestHarness harness)
{
BlobId = harness.JohnBlobStorageClient.AddResource(harness.JohnId.ToString(), "wikiAspirin.gz", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }
}).Result;
FileId = harness.WaitWhileFileProcessed(BlobId);
}
public InvalidCifProcessingFixture(OsdrTestHarness harness)
{
BlobId = harness.JohnBlobStorageClient.AddResource(harness.JohnId.ToString(), "1100110_modified.cif", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }
}).Result;
FileId = harness.WaitWhileRecordsFileProcessed(BlobId);
}
