public CalibrateSensors()
{
InitializeComponent();
//this.channels = new ArrayList();
sensors = new SensorAnnotation(Constants.MAX_CONTROLLERS);
}
public MITesSamplingRateForm(MITesDataFilterer aMITesDataFilterer, SensorAnnotation sensorConfiguration)
{
InitializeComponent();
this.aMITesDataFilterer = aMITesDataFilterer;
this.sensorConfiguration = sensorConfiguration;
InitializeInterface();
}
public HierarchicalClassifier(MITesDecoder aMITesDecoder, Annotation aannotation, SensorAnnotation sannotation, string dataDirectory,GeneralConfiguration configuration)
{
this.classifiers = new Hashtable();
this.dataDirectory = dataDirectory;
Extractor.Initialize(aMITesDecoder, dataDirectory, aannotation, sannotation,configuration);
}
public SensorAnnotation parse(int maxReceivers)
{
SensorAnnotation annotation = new SensorAnnotation(maxReceivers);
XmlDocument dom = new XmlDocument();
dom.Load(this.xmlFile);
XmlNode xNode = dom.DocumentElement;
bool[] countedReceiver = new bool[maxReceivers];
bool firstAccel = false;
for (int i = 0; (i < maxReceivers); i++)
countedReceiver[i] = false;
if ((xNode.Name == Constants.SENSORDATA_ELEMENT) && (xNode.HasChildNodes))
{
foreach (XmlAttribute xAttribute in xNode.Attributes)
{
if (xAttribute.Name == Constants.DATASET_ATTRIBUTE)
{
annotation.Dataset = xAttribute.Value;
}
}
//Sensor nodes
foreach (XmlNode iNode in xNode.ChildNodes)
{
if (iNode.Name == Constants.RECEIVERS_ELEMENT)
{
foreach (XmlNode jNode in iNode.ChildNodes)
{
if (jNode.Name == Constants.RECEIVER_ELEMENT)
{
Receiver receiver = new Receiver();
foreach (XmlAttribute iAttribute in jNode.Attributes)
{
//read nodes attributes
if (iAttribute.Name == Constants.ID_ATTRIBUTE)
{
receiver.ID = Convert.ToInt32(iAttribute.Value);
}
else if (iAttribute.Name == Constants.TYPE_ATTRIBUTE)
{
receiver.Type = iAttribute.Value;
if (receiver.Type == Constants.RECEIVER_BLUETOOTH)
annotation.TotalBluetoothReceivers++;
else if (receiver.Type == Constants.RECEIVER_USB)
annotation.TotalWiredReceivers++;
}
else if (iAttribute.Name == Constants.PASSKEY_ATTRIBUTE)
{
receiver.PassKey = iAttribute.Value;
}
else if (iAttribute.Name == Constants.DECODER_ATTRIBUTE)
{
receiver.Decoder = iAttribute.Value;
}
else if (iAttribute.Name == Constants.MAC_ATTRIBUTE)
{
receiver.MAC = iAttribute.Value;
for (int i = 0; (i < Constants.MAC_SIZE); i++)
receiver.MacAddress[i] = (byte)(System.Int32.Parse(iAttribute.Value.Substring(i * 2, 2), System.Globalization.NumberStyles.AllowHexSpecifier) & 0xff);
}
}
annotation.Receivers.Add(receiver);
annotation.TotalReceivers++;
}
}
}
//Backward compatibility
else if (iNode.Name == Constants.SENSOR_ELEMENT)
{
Sensor sensor = new Sensor();
foreach (XmlAttribute iAttribute in iNode.Attributes)
{
//read nodes attributes
if (iAttribute.Name == Constants.CLASS_ATTRIBUTE)
{
sensor.SensorClass = iAttribute.Value;
}
else if (iAttribute.Name == Constants.TYPE_ATTRIBUTE)
{
sensor.Type = iAttribute.Value;
}
}
foreach (XmlNode jNode in iNode.ChildNodes)
{
//Console.WriteLine(jNode.Name);
foreach (XmlAttribute jAttribute in jNode.Attributes)
{
//read nodes attributes
if ((jNode.Name == Constants.ID_ELEMENT) && (jAttribute.Name == Constants.ID_ATTRIBUTE))
{
sensor.ID = jAttribute.Value;
//if this is an HR sensor
if (Convert.ToInt32(jAttribute.Value) == 0)
{
annotation.IsHR = true;
}
if ((firstAccel == false) && (Convert.ToInt32(jAttribute.Value) > 0))
{
annotation.FirstAccelerometer = Convert.ToInt32(jAttribute.Value);
firstAccel = true;
}
if (annotation.MaximumSensorID < Convert.ToInt32(jAttribute.Value))
annotation.MaximumSensorID = Convert.ToInt32(jAttribute.Value);
}
else if ((jNode.Name == Constants.OBJECT_ELEMENT) && (jAttribute.Name == Constants.TEXT_ATTRIBUTE))
{
sensor.SensorObject = jAttribute.Value;
}
else if ((jNode.Name == Constants.RECEIVER_ELEMENT) && (jAttribute.Name == Constants.ID_ATTRIBUTE))
{
int receiver_id = Convert.ToInt32(jAttribute.Value);
if ((receiver_id < maxReceivers) && (receiver_id >= 0))
{
annotation.NumberSensors[receiver_id] = annotation.NumberSensors[receiver_id] + 1;
sensor.Receiver = jAttribute.Value;
if (countedReceiver[receiver_id] == false)
{
annotation.TotalReceivers++;
countedReceiver[receiver_id] = true;
}
}
else
throw new Exception("Receiver in sensor file out of bound");
//sensor.Receiver = jAttribute.Value;
//if (Convert.ToInt32(sensor.Receiver) == 1)
//{
// annotation.SensorCount1++;
//}
//else if (Convert.ToInt32(sensor.Receiver) == 2)
//{
// annotation.SensorCount2++;
//}
}
else if ((jNode.Name == Constants.LOCATION_ELEMENT) && (jAttribute.Name == Constants.TEXT_ATTRIBUTE))
{
sensor.Location = jAttribute.Value;
}
else if ((jNode.Name == Constants.DESCRIPTION_ELEMENT) && (jAttribute.Name == Constants.TEXT_ATTRIBUTE))
{
sensor.Description = jAttribute.Value;
}
else if ((jNode.Name == Constants.DESCRIPTION_ELEMENT) && (jAttribute.Name == Constants.SR_ATTRIBUTE))
{
sensor.SamplingRate = 12; //TODO
}
else if ((jNode.Name == Constants.DISPLAY_ELEMENT) && (jAttribute.Name == Constants.DISPLAY_TYPE_ATTRIBUTE))
{
sensor.DisplayType = jAttribute.Value;
}
else if ((jNode.Name == Constants.DISPLAY_ELEMENT) && (jAttribute.Name == Constants.DISPLAY_X))
{
sensor.DisplayX = jAttribute.Value;
}
else if ((jNode.Name == Constants.DISPLAY_ELEMENT) && (jAttribute.Name == Constants.DISPLAY_Y))
{
sensor.DisplayY = jAttribute.Value;
}
else if ((jNode.Name == Constants.CALIBRATION_ELEMENT) && (jAttribute.Name == Constants.XMEAN_ATTRIBUTE))
{
sensor.XMean = Convert.ToDouble(jAttribute.Value);
}
else if ((jNode.Name == Constants.CALIBRATION_ELEMENT) && (jAttribute.Name == Constants.XSTD_ATTRIBUTE))
{
sensor.XStd = Convert.ToDouble(jAttribute.Value);
}
else if ((jNode.Name == Constants.CALIBRATION_ELEMENT) && (jAttribute.Name == Constants.YMEAN_ATTRIBUTE))
{
sensor.YMean = Convert.ToDouble(jAttribute.Value);
}
else if ((jNode.Name == Constants.CALIBRATION_ELEMENT) && (jAttribute.Name == Constants.YSTD_ATTRIBUTE))
{
sensor.YStd = Convert.ToDouble(jAttribute.Value);
}
else if ((jNode.Name == Constants.CALIBRATION_ELEMENT) && (jAttribute.Name == Constants.ZMEAN_ATTRIBUTE))
{
sensor.ZMean = Convert.ToDouble(jAttribute.Value);
}
else if ((jNode.Name == Constants.CALIBRATION_ELEMENT) && (jAttribute.Name == Constants.ZSTD_ATTRIBUTE))
{
sensor.ZStd = Convert.ToDouble(jAttribute.Value);
}
//display element has children
if (jNode.Name == Constants.DISPLAY_ELEMENT)
{
foreach (XmlNode kNode in jNode.ChildNodes)
{
foreach (XmlAttribute kAttribute in kNode.Attributes)
{
if ((kNode.Name == Constants.COLOR_ELEMENT) && (kAttribute.Name == Constants.ON_ATTRIBUTE))
{
sensor.ColorOn = kAttribute.Value;
}
else if ((kNode.Name == Constants.COLOR_ELEMENT) && (kAttribute.Name == Constants.OFF_ATTRIBUTE))
{
sensor.ColorOff = kAttribute.Value;
}
}
}
}
}
}
//if (sensor.SensorClass.ToLower()==Constants.MITES.ToLower())
//{
if (sensor.SensorClass == Constants.BUILTIN)
{
annotation.HasBuiltinSensors = true;
annotation.TotalBuiltInSensors = annotation.TotalBuiltInSensors + 1;
}
annotation.Sensors.Add(sensor);
sensor.Index = annotation.Sensors.IndexOf(sensor);
annotation.SensorsIndex.Add(Convert.ToInt32(sensor.ID), sensor.Index);
//}
// else if (sensor.SensorClass.ToLower()== Constants.BUILTIN.ToLower())
//{
// annotation.HasBuiltinSensors = true;
// annotation.BuiltinSensors.Add(sensor);
// }
}
//parsing file information
else if (iNode.Name == Constants.SENSORS_ELEMENT)
{
foreach (XmlNode rNode in iNode.ChildNodes)
{
if (rNode.Name == Constants.SENSOR_ELEMENT)
{
Sensor sensor = new Sensor();
foreach (XmlAttribute iAttribute in rNode.Attributes)
{
//read nodes attributes
if (iAttribute.Name == Constants.CLASS_ATTRIBUTE)
{
sensor.SensorClass = iAttribute.Value;
}
else if (iAttribute.Name == Constants.TYPE_ATTRIBUTE)
{
sensor.Type = iAttribute.Value;
}
}
foreach (XmlNode jNode in rNode.ChildNodes)
{
//Console.WriteLine(jNode.Name);
foreach (XmlAttribute jAttribute in jNode.Attributes)
{
//read nodes attributes
if ((jNode.Name == Constants.ID_ELEMENT) && (jAttribute.Name == Constants.ID_ATTRIBUTE))
{
sensor.ID = jAttribute.Value;
//if this is an HR sensor
if (Convert.ToInt32(jAttribute.Value) == 0)
{
annotation.IsHR = true;
}
if ((firstAccel == false) && (Convert.ToInt32(jAttribute.Value) > 0))
{
annotation.FirstAccelerometer = Convert.ToInt32(jAttribute.Value);
firstAccel = true;
}
if (annotation.MaximumSensorID < Convert.ToInt32(jAttribute.Value))
annotation.MaximumSensorID = Convert.ToInt32(jAttribute.Value);
}
else if ((jNode.Name == Constants.OBJECT_ELEMENT) && (jAttribute.Name == Constants.TEXT_ATTRIBUTE))
{
sensor.SensorObject = jAttribute.Value;
}
else if ((jNode.Name == Constants.RECEIVER_ELEMENT) && (jAttribute.Name == Constants.ID_ATTRIBUTE))
{
int receiver_id = Convert.ToInt32(jAttribute.Value);
if ((receiver_id < maxReceivers) && (receiver_id >= 0))
{
annotation.NumberSensors[receiver_id] = annotation.NumberSensors[receiver_id] + 1;
sensor.Receiver = jAttribute.Value;
//if (countedReceiver[receiver_id] == false)
//{
// annotation.TotalReceivers++;
// countedReceiver[receiver_id] = true;
// }
}
else
throw new Exception("Receiver in sensor file out of bound");
//sensor.Receiver = jAttribute.Value;
//if (Convert.ToInt32(sensor.Receiver) == 1)
//{
// annotation.SensorCount1++;
//}
//else if (Convert.ToInt32(sensor.Receiver) == 2)
//{
// annotation.SensorCount2++;
//}
}
else if ((jNode.Name == Constants.LOCATION_ELEMENT) && (jAttribute.Name == Constants.TEXT_ATTRIBUTE))
{
sensor.Location = jAttribute.Value;
}
else if ((jNode.Name == Constants.DESCRIPTION_ELEMENT) && (jAttribute.Name == Constants.TEXT_ATTRIBUTE))
{
sensor.Description = jAttribute.Value;
}
else if ((jNode.Name == Constants.DESCRIPTION_ELEMENT) && (jAttribute.Name == Constants.SR_ATTRIBUTE))
{
sensor.SamplingRate = Convert.ToInt32(jAttribute.Value); //TODO
}
else if ((jNode.Name == Constants.DISPLAY_ELEMENT) && (jAttribute.Name == Constants.DISPLAY_TYPE_ATTRIBUTE))
{
sensor.DisplayType = jAttribute.Value;
}
else if ((jNode.Name == Constants.DISPLAY_ELEMENT) && (jAttribute.Name == Constants.DISPLAY_X))
{
sensor.DisplayX = jAttribute.Value;
}
else if ((jNode.Name == Constants.DISPLAY_ELEMENT) && (jAttribute.Name == Constants.DISPLAY_Y))
{
sensor.DisplayY = jAttribute.Value;
}
else if ((jNode.Name == Constants.CALIBRATION_ELEMENT) && (jAttribute.Name == Constants.XMEAN_ATTRIBUTE))
{
sensor.XMean = Convert.ToDouble(jAttribute.Value);
}
else if ((jNode.Name == Constants.CALIBRATION_ELEMENT) && (jAttribute.Name == Constants.XSTD_ATTRIBUTE))
{
sensor.XStd = Convert.ToDouble(jAttribute.Value);
}
else if ((jNode.Name == Constants.CALIBRATION_ELEMENT) && (jAttribute.Name == Constants.YMEAN_ATTRIBUTE))
{
sensor.YMean = Convert.ToDouble(jAttribute.Value);
}
else if ((jNode.Name == Constants.CALIBRATION_ELEMENT) && (jAttribute.Name == Constants.YSTD_ATTRIBUTE))
{
sensor.YStd = Convert.ToDouble(jAttribute.Value);
}
else if ((jNode.Name == Constants.CALIBRATION_ELEMENT) && (jAttribute.Name == Constants.ZMEAN_ATTRIBUTE))
{
sensor.ZMean = Convert.ToDouble(jAttribute.Value);
}
else if ((jNode.Name == Constants.CALIBRATION_ELEMENT) && (jAttribute.Name == Constants.ZSTD_ATTRIBUTE))
{
sensor.ZStd = Convert.ToDouble(jAttribute.Value);
}
//display element has children
if (jNode.Name == Constants.DISPLAY_ELEMENT)
{
foreach (XmlNode kNode in jNode.ChildNodes)
{
foreach (XmlAttribute kAttribute in kNode.Attributes)
{
if ((kNode.Name == Constants.COLOR_ELEMENT) && (kAttribute.Name == Constants.ON_ATTRIBUTE))
{
sensor.ColorOn = kAttribute.Value;
}
else if ((kNode.Name == Constants.COLOR_ELEMENT) && (kAttribute.Name == Constants.OFF_ATTRIBUTE))
{
sensor.ColorOff = kAttribute.Value;
}
}
}
}
}
}
//if (sensor.SensorClass.ToLower()==Constants.MITES.ToLower())
//{
if (sensor.SensorClass == Constants.BUILTIN)
{
annotation.HasBuiltinSensors = true;
annotation.TotalBuiltInSensors = annotation.TotalBuiltInSensors + 1;
}
annotation.Sensors.Add(sensor);
sensor.Index = annotation.Sensors.IndexOf(sensor);
annotation.SensorsIndex.Add(Convert.ToInt32(sensor.ID), sensor.Index);
//}
// else if (sensor.SensorClass.ToLower()== Constants.BUILTIN.ToLower())
//{
// annotation.HasBuiltinSensors = true;
// annotation.BuiltinSensors.Add(sensor);
// }
}
}
}
}
}
return annotation;
}
public SensorAnnotation parse(int maxReceivers)
{
SensorAnnotation annotation = new SensorAnnotation(maxReceivers);
XmlDocument dom = new XmlDocument();
dom.Load(this.xmlFile);
XmlNode xNode = dom.DocumentElement;
bool[] countedReceiver = new bool[maxReceivers];
bool firstAccel = false;
for (int i = 0; (i < maxReceivers); i++)
countedReceiver[i] = false;
if ((xNode.Name == Constants.SENSORDATA_ELEMENT) && (xNode.HasChildNodes))
{
foreach (XmlAttribute xAttribute in xNode.Attributes)
{
if (xAttribute.Name == Constants.DATASET_ATTRIBUTE)
{
annotation.Dataset = xAttribute.Value;
}
}
//Sensor nodes
foreach (XmlNode iNode in xNode.ChildNodes)
{
//parsing file information
if (iNode.Name == Constants.SENSOR_ELEMENT)
{
Sensor sensor = new Sensor();
foreach (XmlAttribute iAttribute in iNode.Attributes)
{
//read nodes attributes
if (iAttribute.Name == Constants.CLASS_ATTRIBUTE)
{
sensor.SensorClass = iAttribute.Value;
}
else if (iAttribute.Name == Constants.TYPE_ATTRIBUTE)
{
sensor.Type = iAttribute.Value;
}
}
foreach (XmlNode jNode in iNode.ChildNodes)
{
//Console.WriteLine(jNode.Name);
foreach (XmlAttribute jAttribute in jNode.Attributes)
{
//read nodes attributes
if ((jNode.Name==Constants.ID_ELEMENT) && (jAttribute.Name == Constants.ID_ATTRIBUTE))
{
sensor.ID = jAttribute.Value;
//if this is an HR sensor
if (Convert.ToInt32(jAttribute.Value) == 0)
{
annotation.IsHR = true;
}
if ((firstAccel == false) && (Convert.ToInt32(jAttribute.Value) > 0))
{
annotation.FirstAccelerometer = Convert.ToInt32(jAttribute.Value);
firstAccel = true;
}
if (annotation.MaximumSensorID<Convert.ToInt32(jAttribute.Value))
annotation.MaximumSensorID=Convert.ToInt32(jAttribute.Value);
}
else if ((jNode.Name == Constants.OBJECT_ELEMENT) && (jAttribute.Name == Constants.TEXT_ATTRIBUTE))
{
sensor.SensorObject= jAttribute.Value;
}else if ((jNode.Name == Constants.RECEIVER_ELEMENT) && (jAttribute.Name == Constants.ID_ATTRIBUTE))
{
int receiver_id = Convert.ToInt32(jAttribute.Value);
if ((receiver_id < maxReceivers) && (receiver_id >= 0))
{
annotation.NumberSensors[receiver_id] = annotation.NumberSensors[receiver_id] + 1;
sensor.Receiver = jAttribute.Value;
if (countedReceiver[receiver_id] == false)
{
annotation.TotalReceivers++;
countedReceiver[receiver_id] = true;
}
}
else
throw new Exception("Receiver in sensor file out of bound");
//sensor.Receiver = jAttribute.Value;
//if (Convert.ToInt32(sensor.Receiver) == 1)
//{
// annotation.SensorCount1++;
//}
//else if (Convert.ToInt32(sensor.Receiver) == 2)
//{
// annotation.SensorCount2++;
//}
}
else if ((jNode.Name == Constants.LOCATION_ELEMENT) && (jAttribute.Name == Constants.TEXT_ATTRIBUTE))
{
sensor.Location = jAttribute.Value;
}
else if ((jNode.Name == Constants.DESCRIPTION_ELEMENT) && (jAttribute.Name == Constants.TEXT_ATTRIBUTE))
{
sensor.Description = jAttribute.Value;
}
else if ((jNode.Name == Constants.DISPLAY_ELEMENT) && (jAttribute.Name == Constants.DISPLAY_TYPE_ATTRIBUTE))
{
sensor.DisplayType = jAttribute.Value;
}
else if ((jNode.Name == Constants.DISPLAY_ELEMENT) && (jAttribute.Name == Constants.DISPLAY_X))
{
sensor.DisplayX = jAttribute.Value;
}
else if ((jNode.Name == Constants.DISPLAY_ELEMENT) && (jAttribute.Name == Constants.DISPLAY_Y))
{
sensor.DisplayY = jAttribute.Value;
}
else if ((jNode.Name == Constants.CALIBRATION_ELEMENT) && (jAttribute.Name == Constants.XMEAN_ATTRIBUTE))
{
sensor.XMean = Convert.ToDouble(jAttribute.Value);
}
else if ((jNode.Name == Constants.CALIBRATION_ELEMENT) && (jAttribute.Name == Constants.XSTD_ATTRIBUTE))
{
sensor.XStd = Convert.ToDouble(jAttribute.Value);
}
else if ((jNode.Name == Constants.CALIBRATION_ELEMENT) && (jAttribute.Name == Constants.YMEAN_ATTRIBUTE))
{
sensor.YMean = Convert.ToDouble(jAttribute.Value);
}
else if ((jNode.Name == Constants.CALIBRATION_ELEMENT) && (jAttribute.Name == Constants.YSTD_ATTRIBUTE))
{
sensor.YStd = Convert.ToDouble(jAttribute.Value);
}
else if ((jNode.Name == Constants.CALIBRATION_ELEMENT) && (jAttribute.Name == Constants.ZMEAN_ATTRIBUTE))
{
sensor.ZMean = Convert.ToDouble(jAttribute.Value);
}
else if ((jNode.Name == Constants.CALIBRATION_ELEMENT) && (jAttribute.Name == Constants.ZSTD_ATTRIBUTE))
{
sensor.ZStd = Convert.ToDouble(jAttribute.Value);
}
//display element has children
if (jNode.Name == Constants.DISPLAY_ELEMENT)
{
foreach (XmlNode kNode in jNode.ChildNodes)
{
foreach (XmlAttribute kAttribute in kNode.Attributes)
{
if ( (kNode.Name==Constants.COLOR_ELEMENT) && (kAttribute.Name==Constants.ON_ATTRIBUTE))
{
sensor.ColorOn=kAttribute.Value;
}else if ( (kNode.Name==Constants.COLOR_ELEMENT) && (kAttribute.Name==Constants.OFF_ATTRIBUTE))
{
sensor.ColorOff=kAttribute.Value;
}
}
}
}
}
}
annotation.Sensors.Add(sensor);
}
}
}
return annotation;
}
private void InitializeAnnotator(string dataDirectory)
{
AXML.Reader reader = new AXML.Reader(Constants.MASTER_DIRECTORY,dataDirectory);
if (reader.validate() == false)
{
throw new Exception("Error Code 0: XML format error - activities.xml does not match activities.xsd!");
}
else
{
this.annotation = reader.parse();
this.annotation.DataDirectory = dataDirectory;
SXML.Reader sreader = new SXML.Reader(Constants.MASTER_DIRECTORY, dataDirectory);
if (sreader.validate() == false)
{
throw new Exception("Error Code 0: XML format error - sensors.xml does not match sensors.xsd!");
}
else
{
this.sensors = sreader.parse(Constants.MAX_CONTROLLERS);
InitializeTimers();
//InitializeSound();
InitializeInterface();
}
}
}
public MITesDataCollectionForm(string dataDirectory)
{
progressMessage = null;
Thread t = new Thread(new ThreadStart(ProgressThread));
t.Start();
InitializeComponent();
this.dataDirectory = dataDirectory;
//read the sensor configuration file to determine the number of receivers
//read the activity configuration file
progressMessage="Loading XML protocol and sensors ...";
AXML.Reader reader = new AXML.Reader(Constants.MASTER_DIRECTORY, dataDirectory);
if (reader.validate() == false)
{
throw new Exception("Error Code 0: XML format error - activities.xml does not match activities.xsd!");
}
else
{
this.annotation = reader.parse();
this.annotation.DataDirectory = dataDirectory;
SXML.Reader sreader = new SXML.Reader(Constants.MASTER_DIRECTORY, dataDirectory);
if (sreader.validate() == false)
{
throw new Exception("Error Code 0: XML format error - sensors.xml does not match sensors.xsd!");
}
else
{
this.sensors = sreader.parse(Constants.MAX_CONTROLLERS);
progressMessage+=" Completed\r\n";
}
}
if (this.sensors.IsHR)
this.maxPlots = this.sensors.Sensors.Count - 1;
else
this.maxPlots = this.sensors.Sensors.Count;
//check number of sensors etc.
progressMessage+= "Initializing Timers ...";
InitializeTimers();
progressMessage += " Completed\r\n";
progressMessage += "Initializing GUI ...";
InitializeInterface();
progressMessage += " Completed\r\n";
if ((this.sensors.TotalReceivers > 0) && (this.sensors.TotalReceivers <=Constants.MAX_CONTROLLERS))
{
this.mitesControllers = new MITesReceiverController[this.sensors.TotalReceivers];
this.mitesDecoders = new MITesDecoder[this.sensors.TotalReceivers];
this.aMITesActivityCounters = new Hashtable();
//if (this.sensors.IsHR)
// this.aMITesActivityCounters = new MITesActivityCounter[this.sensors.Sensors.Count-1];
//else
// this.aMITesActivityCounters = new MITesActivityCounter[this.sensors.Sensors.Count - 1];
progressMessage += "Initializing MITes ... searching " + this.sensors.TotalReceivers + " receivers\r\n";
if (InitializeMITes(dataDirectory) == false)
{
MessageBox.Show("Exiting: You picked a configuration with "+this.sensors.TotalReceivers +" receivers. Please make sure they are attached to the computer.");
#if (PocketPC)
Application.Exit();
#else
Environment.Exit(0);
#endif
}
}
progressMessage += "Initializing MITes Quality GUI ...";
InitializeQualityInterface();
progressMessage += " Completed\r\n";
//pass data directory
isExtracting = false;
Extractor.Initialize( this.mitesDecoders[0], dataDirectory,this.annotation,this.sensors);
// MITes Data Filterer stores performance stats for MITes
// Initialize all performance counters for all MITES channels
//calculate good sampling rate
//you need to initialize them all because sometimes mites get data from non-exisiting IDs???
for (int i = 0; i < MITesData.MAX_MITES_CHANNELS; i++)
MITesDataFilterer.MITesPerformanceTracker[i] = new MITesPerformanceStats(0);
//based on how many receivers and to what channels they are listening adjust the good sampling rate
foreach (Sensor sensor in this.sensors.Sensors)
{
int sensor_id = Convert.ToInt32(sensor.ID);
int receiver_id = Convert.ToInt32(sensor.Receiver);
if (sensor_id == 0) //HR sensor
{
MITesDataFilterer.MITesPerformanceTracker[sensor_id].GoodRate =(int)(Constants.HR_SAMPLING_RATE*0.8);
MITesDataFilterer.MITesPerformanceTracker[sensor_id].PerfectRate = Constants.HR_SAMPLING_RATE;
}
else
{
int goodSamplingRate = (int)((Extractor.Configuration.ExpectedSamplingRate * (1 - Extractor.Configuration.MaximumNonconsecutiveFrameLoss)) / this.sensors.NumberSensors[receiver_id]);
MITesDataFilterer.MITesPerformanceTracker[sensor_id].GoodRate = goodSamplingRate;
MITesDataFilterer.MITesPerformanceTracker[sensor_id].PerfectRate = (int)((Extractor.Configuration.ExpectedSamplingRate) / this.sensors.NumberSensors[receiver_id]);
}
}
//create some counters for activity counts
averageX=new int[this.sensors.MaximumSensorID+1];
averageY= new int[this.sensors.MaximumSensorID+1];
averageZ= new int[this.sensors.MaximumSensorID+1];
averageRawX = new int[this.sensors.MaximumSensorID + 1];
averageRawY = new int[this.sensors.MaximumSensorID + 1];
averageRawZ = new int[this.sensors.MaximumSensorID + 1];
prevX= new int[this.sensors.MaximumSensorID+1];
prevY= new int[this.sensors.MaximumSensorID+1];
prevZ= new int[this.sensors.MaximumSensorID+1];
acCounters = new int[this.sensors.MaximumSensorID + 1];
activityCountWindowSize = 0;
activityCountCSVs = new StreamWriter[this.sensors.MaximumSensorID + 1];
samplingCSVs = new StreamWriter[this.sensors.MaximumSensorID + 1];
averagedRaw = new StreamWriter[this.sensors.MaximumSensorID + 1];
masterCSV = new StreamWriter(dataDirectory + "\\MITesSummaryData.csv");
hrCSV = new StreamWriter(dataDirectory + "\\HeartRate_MITes.csv");
string csv_line1 = "UnixTimeStamp,TimeStamp,X,Y,Z";
string csv_line2 = "UnixTimeStamp,TimeStamp,Sampling";
string hr_csv_header = "UnixTimeStamp,TimeStamp,HR";
string master_csv_header = "UnixTimeStamp,TimeStamp";
foreach (Category category in this.annotation.Categories)
master_csv_header += ","+ category.Name;
foreach (Sensor sensor in this.sensors.Sensors)
{
int sensor_id = Convert.ToInt32(sensor.ID);
string location = sensor.Location.Replace(' ', '-');
if (sensor_id > 0) //exclude HR
{
activityCountCSVs[sensor_id] = new StreamWriter(dataDirectory + "\\MITes_" +sensor_id.ToString("00")+"_ActivityCount_"+location+".csv");
activityCountCSVs[sensor_id].WriteLine(csv_line1);
averagedRaw[sensor_id] = new StreamWriter(dataDirectory + "\\MITes_" + sensor_id.ToString("00") + "_1s-RawMean_" + location + ".csv");
averagedRaw[sensor_id].WriteLine(csv_line1);
samplingCSVs[sensor_id] = new StreamWriter(dataDirectory + "\\MITes_" + sensor_id.ToString("00") + "_SampleRate_" + location + ".csv");
samplingCSVs[sensor_id].WriteLine(csv_line2);
master_csv_header += ",MITes" + sensor_id.ToString("00") + "_SR," + "MITes" + sensor_id.ToString("00") + "_AVRaw_X," +
"MITes" + sensor_id.ToString("00") + "_AVRaw_Y," + "MITes" + sensor_id.ToString("00") + "_AVRaw_Z," + "MITes" + sensor_id.ToString("00") + "_AC_X," +
"MITes" + sensor_id.ToString("00") + "_AC_Y," + "MITes" + sensor_id.ToString("00") + "_AC_Z";
}
}
master_csv_header += ",HR";
this.masterCSV.WriteLine(master_csv_header);
this.hrCSV.WriteLine(hr_csv_header);
//activityCountCSV=new StreamWriter(dataDirectory+"\\"+Constants.ACTIVITY_COUNT_FILENAME);
//string csv_line = "";
//csv_line += "UnixTimeStamp";
//foreach (Sensor sensor in this.sensors.Sensors)
//{
// int sensor_id = Convert.ToInt32(sensor.ID);
// if (sensor_id > 0) //exclude HR
// {
// csv_line += ",ACC_" + sensor_id + "_SAMP";
// csv_line += ",ACC_" + sensor_id + "_X";
// csv_line += ",ACC_" + sensor_id + "_Y";
// csv_line += ",ACC_" + sensor_id + "_Z";
// }
//}
//activityCountCSV.WriteLine(csv_line);
UnixTime.InitializeTime(); //passed to adjust time when its granularity is not good
#if (PocketPC)
this.tabControl1.SelectedIndex= 0;
#endif
isCollectingSimpleData = false;
isCollectingDetailedData = false;
isPlotting = true;
//simple data collection per second
//this.tws = new TextWriter[MITesData.MAX_MITES_CHANNELS];
//for (int i = 0; (i < MITesData.MAX_MITES_CHANNELS); i++)
// this.tws[i] = null;
//this.mitesLastTimeStamps=new double[MITesData.MAX_MITES_CHANNELS];
//this.mitesSampleCounters= new int[MITesData.MAX_MITES_CHANNELS];
//this.xs=new int[MITesData.MAX_MITES_CHANNELS];
//this.ys = new int[MITesData.MAX_MITES_CHANNELS];
//this.zs = new int[MITesData.MAX_MITES_CHANNELS];
//For demo
//this.textBoxHR.Visible = false;
//this.textBoxAC3.Visible = false;
//this.label11.Text = "";
bool startReceiverThreads = true;
for (int i = 0; (i<this.sensors.TotalReceivers); i++)
{
if ((this.mitesControllers[i] == null) || (this.mitesControllers[i].GetComPortNumber() == 0))
startReceiverThreads = false;
}
if (startReceiverThreads == true)
isStartedReceiver = true;
else
{
Application.Exit();
}
t.Abort();
#if (PocketPC)
#else
this.ShowForms();
#endif
//Last thing enable the timers
this.readDataTimer.Enabled = true;
this.qualityTimer.Enabled = true;
this.HRTimer.Enabled = true;
}
public SensorAnnotation parse(int maxReceivers)
{
SensorAnnotation annotation = new SensorAnnotation(maxReceivers);
XmlDocument dom = new XmlDocument();
dom.Load(this.xmlFile);
XmlNode xNode = dom.DocumentElement;
bool[] countedReceiver = new bool[maxReceivers];
bool firstAccel = false;
for (int i = 0; (i < maxReceivers); i++)
{
countedReceiver[i] = false;
}
if ((xNode.Name == Constants.SENSORDATA_ELEMENT) && (xNode.HasChildNodes))
{
foreach (XmlAttribute xAttribute in xNode.Attributes)
{
if (xAttribute.Name == Constants.DATASET_ATTRIBUTE)
{
annotation.Dataset = xAttribute.Value;
}
}
//Sensor nodes
foreach (XmlNode iNode in xNode.ChildNodes)
{
if (iNode.Name == Constants.RECEIVERS_ELEMENT)
{
foreach (XmlNode jNode in iNode.ChildNodes)
{
if (jNode.Name == Constants.RECEIVER_ELEMENT)
{
Receiver receiver = new Receiver();
foreach (XmlAttribute iAttribute in jNode.Attributes)
{
//read nodes attributes
if (iAttribute.Name == Constants.ID_ATTRIBUTE)
{
receiver.ID = Convert.ToInt32(iAttribute.Value);
}
else if (iAttribute.Name == Constants.TYPE_ATTRIBUTE)
{
receiver.Type = iAttribute.Value;
if (receiver.Type == Constants.RECEIVER_BLUETOOTH)
{
annotation.TotalBluetoothReceivers++;
}
else if (receiver.Type == Constants.RECEIVER_USB)
{
annotation.TotalWiredReceivers++;
}
}
else if (iAttribute.Name == Constants.PASSKEY_ATTRIBUTE)
{
receiver.PassKey = iAttribute.Value;
}
else if (iAttribute.Name == Constants.DECODER_ATTRIBUTE)
{
receiver.Decoder = iAttribute.Value;
}
else if (iAttribute.Name == Constants.MAC_ATTRIBUTE)
{
receiver.MAC = iAttribute.Value;
for (int i = 0; (i < Constants.MAC_SIZE); i++)
{
receiver.MacAddress[i] = (byte)(System.Int32.Parse(iAttribute.Value.Substring(i * 2, 2), System.Globalization.NumberStyles.AllowHexSpecifier) & 0xff);
}
}
}
annotation.Receivers.Add(receiver);
annotation.TotalReceivers++;
}
}
}
//Backward compatibility
else if (iNode.Name == Constants.SENSOR_ELEMENT)
{
Sensor sensor = new Sensor();
foreach (XmlAttribute iAttribute in iNode.Attributes)
{
//read nodes attributes
if (iAttribute.Name == Constants.CLASS_ATTRIBUTE)
{
sensor.SensorClass = iAttribute.Value;
}
else if (iAttribute.Name == Constants.TYPE_ATTRIBUTE)
{
sensor.Type = iAttribute.Value;
}
}
foreach (XmlNode jNode in iNode.ChildNodes)
{
//Console.WriteLine(jNode.Name);
foreach (XmlAttribute jAttribute in jNode.Attributes)
{
//read nodes attributes
if ((jNode.Name == Constants.ID_ELEMENT) && (jAttribute.Name == Constants.ID_ATTRIBUTE))
{
sensor.ID = jAttribute.Value;
//if this is an HR sensor
if (Convert.ToInt32(jAttribute.Value) == 0)
{
annotation.IsHR = true;
}
if ((firstAccel == false) && (Convert.ToInt32(jAttribute.Value) > 0))
{
annotation.FirstAccelerometer = Convert.ToInt32(jAttribute.Value);
firstAccel = true;
}
if (annotation.MaximumSensorID < Convert.ToInt32(jAttribute.Value))
{
annotation.MaximumSensorID = Convert.ToInt32(jAttribute.Value);
}
}
else if ((jNode.Name == Constants.OBJECT_ELEMENT) && (jAttribute.Name == Constants.TEXT_ATTRIBUTE))
{
sensor.SensorObject = jAttribute.Value;
}
else if ((jNode.Name == Constants.RECEIVER_ELEMENT) && (jAttribute.Name == Constants.ID_ATTRIBUTE))
{
int receiver_id = Convert.ToInt32(jAttribute.Value);
if ((receiver_id < maxReceivers) && (receiver_id >= 0))
{
annotation.NumberSensors[receiver_id] = annotation.NumberSensors[receiver_id] + 1;
sensor.Receiver = jAttribute.Value;
if (countedReceiver[receiver_id] == false)
{
annotation.TotalReceivers++;
countedReceiver[receiver_id] = true;
}
}
else
{
throw new Exception("Receiver in sensor file out of bound");
}
//sensor.Receiver = jAttribute.Value;
//if (Convert.ToInt32(sensor.Receiver) == 1)
//{
// annotation.SensorCount1++;
//}
//else if (Convert.ToInt32(sensor.Receiver) == 2)
//{
// annotation.SensorCount2++;
//}
}
else if ((jNode.Name == Constants.LOCATION_ELEMENT) && (jAttribute.Name == Constants.TEXT_ATTRIBUTE))
{
sensor.Location = jAttribute.Value;
}
else if ((jNode.Name == Constants.DESCRIPTION_ELEMENT) && (jAttribute.Name == Constants.TEXT_ATTRIBUTE))
{
sensor.Description = jAttribute.Value;
}
else if ((jNode.Name == Constants.DESCRIPTION_ELEMENT) && (jAttribute.Name == Constants.SR_ATTRIBUTE))
{
sensor.SamplingRate = 12; //TODO
}
else if ((jNode.Name == Constants.DISPLAY_ELEMENT) && (jAttribute.Name == Constants.DISPLAY_TYPE_ATTRIBUTE))
{
sensor.DisplayType = jAttribute.Value;
}
else if ((jNode.Name == Constants.DISPLAY_ELEMENT) && (jAttribute.Name == Constants.DISPLAY_X))
{
sensor.DisplayX = jAttribute.Value;
}
else if ((jNode.Name == Constants.DISPLAY_ELEMENT) && (jAttribute.Name == Constants.DISPLAY_Y))
{
sensor.DisplayY = jAttribute.Value;
}
else if ((jNode.Name == Constants.CALIBRATION_ELEMENT) && (jAttribute.Name == Constants.XMEAN_ATTRIBUTE))
{
sensor.XMean = Convert.ToDouble(jAttribute.Value);
}
else if ((jNode.Name == Constants.CALIBRATION_ELEMENT) && (jAttribute.Name == Constants.XSTD_ATTRIBUTE))
{
sensor.XStd = Convert.ToDouble(jAttribute.Value);
}
else if ((jNode.Name == Constants.CALIBRATION_ELEMENT) && (jAttribute.Name == Constants.YMEAN_ATTRIBUTE))
{
sensor.YMean = Convert.ToDouble(jAttribute.Value);
}
else if ((jNode.Name == Constants.CALIBRATION_ELEMENT) && (jAttribute.Name == Constants.YSTD_ATTRIBUTE))
{
sensor.YStd = Convert.ToDouble(jAttribute.Value);
}
else if ((jNode.Name == Constants.CALIBRATION_ELEMENT) && (jAttribute.Name == Constants.ZMEAN_ATTRIBUTE))
{
sensor.ZMean = Convert.ToDouble(jAttribute.Value);
}
else if ((jNode.Name == Constants.CALIBRATION_ELEMENT) && (jAttribute.Name == Constants.ZSTD_ATTRIBUTE))
{
sensor.ZStd = Convert.ToDouble(jAttribute.Value);
}
//display element has children
if (jNode.Name == Constants.DISPLAY_ELEMENT)
{
foreach (XmlNode kNode in jNode.ChildNodes)
{
foreach (XmlAttribute kAttribute in kNode.Attributes)
{
if ((kNode.Name == Constants.COLOR_ELEMENT) && (kAttribute.Name == Constants.ON_ATTRIBUTE))
{
sensor.ColorOn = kAttribute.Value;
}
else if ((kNode.Name == Constants.COLOR_ELEMENT) && (kAttribute.Name == Constants.OFF_ATTRIBUTE))
{
sensor.ColorOff = kAttribute.Value;
}
}
}
}
}
}
//if (sensor.SensorClass.ToLower()==Constants.MITES.ToLower())
//{
if (sensor.SensorClass == Constants.BUILTIN)
{
annotation.HasBuiltinSensors = true;
annotation.TotalBuiltInSensors = annotation.TotalBuiltInSensors + 1;
}
annotation.Sensors.Add(sensor);
sensor.Index = annotation.Sensors.IndexOf(sensor);
annotation.SensorsIndex.Add(Convert.ToInt32(sensor.ID), sensor.Index);
//}
// else if (sensor.SensorClass.ToLower()== Constants.BUILTIN.ToLower())
//{
// annotation.HasBuiltinSensors = true;
// annotation.BuiltinSensors.Add(sensor);
// }
}
//parsing file information
else if (iNode.Name == Constants.SENSORS_ELEMENT)
{
foreach (XmlNode rNode in iNode.ChildNodes)
{
if (rNode.Name == Constants.SENSOR_ELEMENT)
{
Sensor sensor = new Sensor();
foreach (XmlAttribute iAttribute in rNode.Attributes)
{
//read nodes attributes
if (iAttribute.Name == Constants.CLASS_ATTRIBUTE)
{
sensor.SensorClass = iAttribute.Value;
}
else if (iAttribute.Name == Constants.TYPE_ATTRIBUTE)
{
sensor.Type = iAttribute.Value;
}
}
foreach (XmlNode jNode in rNode.ChildNodes)
{
//Console.WriteLine(jNode.Name);
foreach (XmlAttribute jAttribute in jNode.Attributes)
{
//read nodes attributes
if ((jNode.Name == Constants.ID_ELEMENT) && (jAttribute.Name == Constants.ID_ATTRIBUTE))
{
sensor.ID = jAttribute.Value;
//if this is an HR sensor
if (Convert.ToInt32(jAttribute.Value) == 0)
{
annotation.IsHR = true;
}
if ((firstAccel == false) && (Convert.ToInt32(jAttribute.Value) > 0))
{
annotation.FirstAccelerometer = Convert.ToInt32(jAttribute.Value);
firstAccel = true;
}
if (annotation.MaximumSensorID < Convert.ToInt32(jAttribute.Value))
{
annotation.MaximumSensorID = Convert.ToInt32(jAttribute.Value);
}
}
else if ((jNode.Name == Constants.OBJECT_ELEMENT) && (jAttribute.Name == Constants.TEXT_ATTRIBUTE))
{
sensor.SensorObject = jAttribute.Value;
}
else if ((jNode.Name == Constants.RECEIVER_ELEMENT) && (jAttribute.Name == Constants.ID_ATTRIBUTE))
{
int receiver_id = Convert.ToInt32(jAttribute.Value);
if ((receiver_id < maxReceivers) && (receiver_id >= 0))
{
annotation.NumberSensors[receiver_id] = annotation.NumberSensors[receiver_id] + 1;
sensor.Receiver = jAttribute.Value;
//if (countedReceiver[receiver_id] == false)
//{
// annotation.TotalReceivers++;
// countedReceiver[receiver_id] = true;
// }
}
else
{
throw new Exception("Receiver in sensor file out of bound");
}
//sensor.Receiver = jAttribute.Value;
//if (Convert.ToInt32(sensor.Receiver) == 1)
//{
// annotation.SensorCount1++;
//}
//else if (Convert.ToInt32(sensor.Receiver) == 2)
//{
// annotation.SensorCount2++;
//}
}
else if ((jNode.Name == Constants.LOCATION_ELEMENT) && (jAttribute.Name == Constants.TEXT_ATTRIBUTE))
{
sensor.Location = jAttribute.Value;
}
else if ((jNode.Name == Constants.DESCRIPTION_ELEMENT) && (jAttribute.Name == Constants.TEXT_ATTRIBUTE))
{
sensor.Description = jAttribute.Value;
}
else if ((jNode.Name == Constants.DESCRIPTION_ELEMENT) && (jAttribute.Name == Constants.SR_ATTRIBUTE))
{
sensor.SamplingRate = Convert.ToInt32(jAttribute.Value); //TODO
}
else if ((jNode.Name == Constants.DISPLAY_ELEMENT) && (jAttribute.Name == Constants.DISPLAY_TYPE_ATTRIBUTE))
{
sensor.DisplayType = jAttribute.Value;
}
else if ((jNode.Name == Constants.DISPLAY_ELEMENT) && (jAttribute.Name == Constants.DISPLAY_X))
{
sensor.DisplayX = jAttribute.Value;
}
else if ((jNode.Name == Constants.DISPLAY_ELEMENT) && (jAttribute.Name == Constants.DISPLAY_Y))
{
sensor.DisplayY = jAttribute.Value;
}
else if ((jNode.Name == Constants.CALIBRATION_ELEMENT) && (jAttribute.Name == Constants.XMEAN_ATTRIBUTE))
{
sensor.XMean = Convert.ToDouble(jAttribute.Value);
}
else if ((jNode.Name == Constants.CALIBRATION_ELEMENT) && (jAttribute.Name == Constants.XSTD_ATTRIBUTE))
{
sensor.XStd = Convert.ToDouble(jAttribute.Value);
}
else if ((jNode.Name == Constants.CALIBRATION_ELEMENT) && (jAttribute.Name == Constants.YMEAN_ATTRIBUTE))
{
sensor.YMean = Convert.ToDouble(jAttribute.Value);
}
else if ((jNode.Name == Constants.CALIBRATION_ELEMENT) && (jAttribute.Name == Constants.YSTD_ATTRIBUTE))
{
sensor.YStd = Convert.ToDouble(jAttribute.Value);
}
else if ((jNode.Name == Constants.CALIBRATION_ELEMENT) && (jAttribute.Name == Constants.ZMEAN_ATTRIBUTE))
{
sensor.ZMean = Convert.ToDouble(jAttribute.Value);
}
else if ((jNode.Name == Constants.CALIBRATION_ELEMENT) && (jAttribute.Name == Constants.ZSTD_ATTRIBUTE))
{
sensor.ZStd = Convert.ToDouble(jAttribute.Value);
}
//display element has children
if (jNode.Name == Constants.DISPLAY_ELEMENT)
{
foreach (XmlNode kNode in jNode.ChildNodes)
{
foreach (XmlAttribute kAttribute in kNode.Attributes)
{
if ((kNode.Name == Constants.COLOR_ELEMENT) && (kAttribute.Name == Constants.ON_ATTRIBUTE))
{
sensor.ColorOn = kAttribute.Value;
}
else if ((kNode.Name == Constants.COLOR_ELEMENT) && (kAttribute.Name == Constants.OFF_ATTRIBUTE))
{
sensor.ColorOff = kAttribute.Value;
}
}
}
}
}
}
//if (sensor.SensorClass.ToLower()==Constants.MITES.ToLower())
//{
if (sensor.SensorClass == Constants.BUILTIN)
{
annotation.HasBuiltinSensors = true;
annotation.TotalBuiltInSensors = annotation.TotalBuiltInSensors + 1;
}
annotation.Sensors.Add(sensor);
sensor.Index = annotation.Sensors.IndexOf(sensor);
annotation.SensorsIndex.Add(Convert.ToInt32(sensor.ID), sensor.Index);
//}
// else if (sensor.SensorClass.ToLower()== Constants.BUILTIN.ToLower())
//{
// annotation.HasBuiltinSensors = true;
// annotation.BuiltinSensors.Add(sensor);
// }
}
}
}
}
}
return(annotation);
}
public MITesDataCollectionForm(string dataDirectory)
{
//where data is being stored
this.dataDirectory = dataDirectory;
//Initialize high resolution unix timer
UnixTime.InitializeTime();
//Initialize and start GUI progress thread
progressMessage = null;
aProgressThread = new Thread(new ThreadStart(ProgressThread));
aProgressThread.Start();
#region Load Configuration files
//load the activity and sensor configuration files
progressMessage = "Loading XML protocol and sensors ...";
AXML.Reader reader = new AXML.Reader(Constants.MASTER_DIRECTORY, dataDirectory);
#if (!PocketPC)
if (reader.validate() == false)
{
throw new Exception("Error Code 0: XML format error - activities.xml does not match activities.xsd!");
}
else
{
#endif
this.annotation = reader.parse();
this.annotation.DataDirectory = dataDirectory;
SXML.Reader sreader = new SXML.Reader(Constants.MASTER_DIRECTORY, dataDirectory);
#if (!PocketPC)
if (sreader.validate() == false)
{
throw new Exception("Error Code 0: XML format error - sensors.xml does not match sensors.xsd!");
}
else
{
#endif
this.sensors = sreader.parse(Constants.MAX_CONTROLLERS);
progressMessage += " Completed\r\n";
//TODO: remove BT components
progressMessage += "Loading configuration file ...";
MITesFeatures.core.conf.ConfigurationReader creader = new MITesFeatures.core.conf.ConfigurationReader(dataDirectory);
this.configuration = creader.parse();
progressMessage += " Completed\r\n";
#if (!PocketPC)
}
}
#endif
#endregion Load Configuration files
//Initialize 1 master decoder
this.masterDecoder = new MITesDecoder();
#region Initialize External Data Reception Channels
//Initialize Data reception for Bluetooth and USB
if ((this.sensors.TotalReceivers > 0) && (this.sensors.TotalReceivers <= Constants.MAX_CONTROLLERS))
{
//Initialize arrays to store USB and Bluetooth controllers
this.mitesControllers = new MITesReceiverController[this.sensors.TotalWiredReceivers];
#if (PocketPC)
this.bluetoothControllers = new BluetoothController[this.sensors.TotalBluetoothReceivers];
// this.ts = new Thread[this.sensors.TotalBluetoothReceivers];
#endif
//Initialize array to store Bluetooth connection status
//this.bluetoothConnectionStatus = new bool[this.sensors.TotalBluetoothReceivers];
//Initialize a decoder for each sensor
this.mitesDecoders = new MITesDecoder[this.sensors.TotalReceivers];
this.aMITesActivityCounters = new Hashtable();
#if (PocketPC)
#region Bluetooth reception channels initialization
//Initialize and search for wockets connections
progressMessage += "Initializing Bluetooth receivers ... searching " + this.sensors.TotalBluetoothReceivers+ " BT receivers\r\n";
//Try to initialize all Bluetooth receivers 10 times then exit
int initializationAttempt = 0;
while (initializationAttempt <= 10)
{
if (InitializeBluetoothReceivers() == false)
{
initializationAttempt++;
if (initializationAttempt == 10)
{
MessageBox.Show("Exiting: Some Bluetooth receivers in your configuration were not initialized.");
Application.Exit();
System.Diagnostics.Process.GetCurrentProcess().Kill();
}
else
progressMessage += "Failed to initialize all BT connections. Retrying (" + initializationAttempt + ")...\r\n";
}
else
break;
Thread.Sleep(2000);
}
#endregion Bluetooth reception channels initialization
#endif
#region USB reception channels initialization
if (InitializeUSBReceivers() == false)
{
MessageBox.Show("Exiting: Some USB receivers in your configuration were not initialized.");
#if (PocketPC)
Application.Exit();
System.Diagnostics.Process.GetCurrentProcess().Kill();
#else
Environment.Exit(0);
#endif
}
#endregion USB reception channels initialization
}
#endregion Initialize External Data Reception Channels
#if (PocketPC)
#region Initialize Builtin Data Reception Channels
if (InitializeBuiltinReceivers() == false)
{
MessageBox.Show("Exiting: A built in receiver channel was not found.");
Application.Exit();
System.Diagnostics.Process.GetCurrentProcess().Kill();
}
#endregion Initialize Builtin Data Reception Channels
#endif
#region Initialize GUI Components
//initialize the interface components
InitializeComponent();
//Initialize GUI timers
progressMessage += "Initializing Timers ...";
InitializeTimers();
progressMessage += " Completed\r\n";
//Initialize different GUI components
progressMessage += "Initializing GUI ...";
InitializeInterface();
progressMessage += " Completed\r\n";
this.isPlotting = true;
//count the number of accelerometers
if (this.sensors.IsHR)
this.maxPlots = this.sensors.Sensors.Count - 1;
else
this.maxPlots = this.sensors.Sensors.Count;
SetFormPositions();
if (this.sensors.TotalReceivers > 0)
aMITesPlotter = new MITesScalablePlotter(this.panel1, MITesScalablePlotter.DeviceTypes.IPAQ, maxPlots, this.masterDecoder, GetGraphSize(false));
else
aMITesPlotter = new MITesScalablePlotter(this.panel1, MITesScalablePlotter.DeviceTypes.IPAQ, maxPlots, this.masterDecoder, GetGraphSize(false));
//Override the resize event
#if (PocketPC)
this.Resize += new EventHandler(OnResize);
#else
this.form1.Resize += new EventHandler(OnResizeForm1);
this.form1.FormClosing += new FormClosingEventHandler(form_FormClosing);
this.form2.Resize += new EventHandler(OnResizeForm2);
this.form2.FormClosing += new FormClosingEventHandler(form_FormClosing);
this.form3.Resize += new EventHandler(OnResizeForm3);
this.form3.FormClosing += new FormClosingEventHandler(form_FormClosing);
this.form4.Resize += new EventHandler(OnResizeForm4);
this.form4.FormClosing += new FormClosingEventHandler(form_FormClosing);
#endif
//Initialize the quality interface
progressMessage += "Initializing MITes Quality GUI ...";
InitializeQualityInterface();
progressMessage += " Completed\r\n";
//Remove classifier tabs
#if (PocketPC)
this.tabControl1.TabPages.RemoveAt(4);
this.tabControl1.SelectedIndex = 0;
#else
this.ShowForms();
#endif
#endregion Initialize GUI Components
#region Initialize Feature Extraction
this.isExtracting = false;
if (this.sensors.TotalReceivers > 0) // if there is at least 1 MIT
//Extractor.Initialize(this.mitesDecoders[0], dataDirectory, this.annotation, this.sensors, this.configuration);
Extractor.Initialize(this.masterDecoder, dataDirectory, this.annotation, this.sensors, this.configuration);
else if (this.sensors.Sensors.Count > 0) // only built in
Extractor.Initialize(new MITesDecoder(), dataDirectory, this.annotation, this.sensors, this.configuration);
#endregion Initialize Feature Extraction
#region Initialize Quality Tracking variables
InitializeQuality();
#endregion Initialize Quality Tracking variables
#region Initialize Logging
InitializeLogging(dataDirectory);
#endregion Initialize Logging
#region Initialize CSV Storage (PC Only)
#if (!PocketPC)
//create some counters for activity counts
averageX = new int[this.sensors.MaximumSensorID + 1];
averageY = new int[this.sensors.MaximumSensorID + 1];
averageZ = new int[this.sensors.MaximumSensorID + 1];
averageRawX = new int[this.sensors.MaximumSensorID + 1];
averageRawY = new int[this.sensors.MaximumSensorID + 1];
averageRawZ = new int[this.sensors.MaximumSensorID + 1];
prevX = new int[this.sensors.MaximumSensorID + 1];
prevY = new int[this.sensors.MaximumSensorID + 1];
prevZ = new int[this.sensors.MaximumSensorID + 1];
acCounters = new int[this.sensors.MaximumSensorID + 1];
activityCountWindowSize = 0;
activityCountCSVs = new StreamWriter[this.sensors.MaximumSensorID + 1];
samplingCSVs = new StreamWriter[this.sensors.MaximumSensorID + 1];
averagedRaw = new StreamWriter[this.sensors.MaximumSensorID + 1];
masterCSV = new StreamWriter(dataDirectory + "\\MITesSummaryData.csv");
hrCSV = new StreamWriter(dataDirectory + "\\HeartRate_MITes.csv");
string csv_line1 = "UnixTimeStamp,TimeStamp,X,Y,Z";
string csv_line2 = "UnixTimeStamp,TimeStamp,Sampling";
string hr_csv_header = "UnixTimeStamp,TimeStamp,HR";
string master_csv_header = "UnixTimeStamp,TimeStamp";
foreach (Category category in this.annotation.Categories)
master_csv_header += "," + category.Name;
foreach (Sensor sensor in this.sensors.Sensors)
{
int sensor_id = Convert.ToInt32(sensor.ID);
string location = sensor.Location.Replace(' ', '-');
if (sensor_id > 0) //exclude HR
{
activityCountCSVs[sensor_id] = new StreamWriter(dataDirectory + "\\MITes_" + sensor_id.ToString("00") + "_ActivityCount_" + location + ".csv");
activityCountCSVs[sensor_id].WriteLine(csv_line1);
averagedRaw[sensor_id] = new StreamWriter(dataDirectory + "\\MITes_" + sensor_id.ToString("00") + "_1s-RawMean_" + location + ".csv");
averagedRaw[sensor_id].WriteLine(csv_line1);
samplingCSVs[sensor_id] = new StreamWriter(dataDirectory + "\\MITes_" + sensor_id.ToString("00") + "_SampleRate_" + location + ".csv");
samplingCSVs[sensor_id].WriteLine(csv_line2);
master_csv_header += ",MITes" + sensor_id.ToString("00") + "_SR," + "MITes" + sensor_id.ToString("00") + "_AVRaw_X," +
"MITes" + sensor_id.ToString("00") + "_AVRaw_Y," + "MITes" + sensor_id.ToString("00") + "_AVRaw_Z," + "MITes" + sensor_id.ToString("00") + "_AC_X," +
"MITes" + sensor_id.ToString("00") + "_AC_Y," + "MITes" + sensor_id.ToString("00") + "_AC_Z";
}
}
master_csv_header += ",HR";
this.masterCSV.WriteLine(master_csv_header);
this.hrCSV.WriteLine(hr_csv_header);
#endif
#endregion Initialize CSV Storage (PC Only)
#region Start Collecting Data
this.collectDataMode = true;
#if (PocketPC)
this.isCollectingDetailedData = false;
#else
this.isCollectingDetailedData = true;
#endif
//if (this.sensors.TotalReceivers > 0)
// isStartedReceiver = true;
//Start the built in polling thread
#if (PocketPC)
if (this.sensors.HasBuiltinSensors)
{
this.pollingThread = new Thread(new ThreadStart(this.pollingData));
this.pollingThread.Priority = ThreadPriority.Lowest;
this.pollingThread.Start();
}
#endif
//Terminate the progress thread
progressThreadQuit = true;
//Enable all timer functions
this.readDataTimer.Enabled = true;
this.qualityTimer.Enabled = true;
if (this.sensors.IsHR)
this.HRTimer.Enabled = true;
#endregion Start Collecting Data
}
public MITesDataCollectionForm()
{
//Initialize the UNIX QueryPerformanceCounter
UnixTime.InitializeTime();
//intialize the mode of the software
this.collectDataMode = false;
this.isCollectingDetailedData = false;
this.isPlotting = false;
this.isExtracting = false;
//initialize the progress thread
progressMessage = null;
aProgressThread = new Thread(new ThreadStart(ProgressThread));
aProgressThread.Start();
//initialize the interface components
InitializeComponent();
//Initialize where the data will be stored and where the configuration
//files exist
this.dataDirectory = Constants.DEFAULT_DATA_STORAGE_DIRECTORY;
//load the activity and sensor configuration files
progressMessage = "Loading XML protocol and sensors ...";
AXML.Reader reader = new AXML.Reader(Constants.MASTER_DIRECTORY, Constants.DEFAULT_DATA_STORAGE_DIRECTORY);
this.annotation = reader.parse();
this.annotation.DataDirectory = Constants.DEFAULT_DATA_STORAGE_DIRECTORY;
SXML.Reader sreader = new SXML.Reader(Constants.MASTER_DIRECTORY, Constants.DEFAULT_DATA_STORAGE_DIRECTORY);
this.sensors = sreader.parse(Constants.MAX_CONTROLLERS);
progressMessage += " Completed\r\n";
progressMessage += "Loading configuration file ...";
MITesFeatures.core.conf.ConfigurationReader creader = new MITesFeatures.core.conf.ConfigurationReader(Constants.DEFAULT_DATA_STORAGE_DIRECTORY);
this.configuration = creader.parse();
progressMessage += " Completed\r\n";
//calculate how many plots to be drawn
if (this.sensors.IsHR)
this.maxPlots = this.sensors.Sensors.Count - 1;
else
this.maxPlots = this.sensors.Sensors.Count;
//Initialize the timers
progressMessage += "Initializing Timers ...";
InitializeTimers();
progressMessage += " Completed\r\n";
//Initialize different GUI components
progressMessage += "Initializing GUI ...";
InitializeInterface();
progressMessage += " Completed\r\n";
#if (PocketPC)
this.tabControl1.TabPages.RemoveAt(4);
this.tabControl1.TabPages.RemoveAt(3);
this.tabControl1.TabPages.RemoveAt(2);
this.tabControl1.TabPages.RemoveAt(0);
this.tabControl1.SelectedIndex = 0;
#endif
progressThreadQuit = true;
}
//This constructor initializes the software for calibration of a list
//of sensors
public MITesDataCollectionForm(SensorAnnotation uncalibratedSensors, string dataDirectory)
{
//Initialize the UNIX timer to use QueryPerformanceCounter
UnixTime.InitializeTime();
//Setup the initial state of the calibration variables
this.sensors = uncalibratedSensors;
this.currentCalibrationSensorIndex = 0;
this.calCounter = 0;
#if (PocketPC)
this.horizontalMITes = (System.Drawing.Image)new System.Drawing.Bitmap(Constants.MITES_HORIZONTAL_96_96);
this.verticalMITes = (System.Drawing.Image)new System.Drawing.Bitmap(Constants.MITES_VERTICAL_96_96);
#else
this.horizontalMITes = (System.Drawing.Image)new System.Drawing.Bitmap(Constants.MITES_HORIZONTAL_288_288);
this.verticalMITes = (System.Drawing.Image)new System.Drawing.Bitmap(Constants.MITES_VERTICAL_288_288);
#endif
//create a dummy annotation
this.annotation = new Annotation();
//make sure the software will not collect or extract features
this.collectDataMode = false;
this.isClassifying = false;
this.isExtracting = false;
this.isCollectingDetailedData = false;
//setup where the sensordata file will be stored
this.dataDirectory = dataDirectory;
//setup plotting parameters
isPlotting = true;
this.maxPlots = this.sensors.Sensors.Count;
//Spawn the progress thread
progressMessage = null;
aProgressThread = new Thread(new ThreadStart(ProgressThread));
aProgressThread.Start();
//Intialize the interface of the forms
InitializeComponent();
progressMessage += "Initializing Timers ...";
InitializeTimers();
progressMessage += " Completed\r\n";
progressMessage += "Initializing GUI ...";
InitializeInterface();
progressMessage += " Completed\r\n";
progressMessage += "Loading configuration file ...";
MITesFeatures.core.conf.ConfigurationReader confreader = new MITesFeatures.core.conf.ConfigurationReader(dataDirectory);
this.configuration = confreader.parse();
progressMessage += " Completed\r\n";
#if (PocketPC)
//setup the Bluetooth if needed
if (this.configuration.Connection == MITesFeatures.core.conf.Constants.SOFTWARE_CONNECTION_BLUETOOTH)
{
progressMessage += "Initializing Bluetooth ...";
/*
this.bt = new BluetoothController();
try
{
this.bluetoothPort = bt.initialize(this.configuration.MacAddress, this.configuration.Passkey);
}
catch (Exception e)
{
progressMessage += " Failed\r\n";
MessageBox.Show("Failed to find Bluetooth Device... exiting!");
bt.close();
Application.Exit();
System.Diagnostics.Process.GetCurrentProcess().Kill();
}
*/
progressMessage += " Completed\r\n";
}
#endif
//Intialize the MITes Receivers, decoders and counters based
//on the chosen sensors
if ((this.sensors.TotalReceivers > 0) && (this.sensors.TotalReceivers <= Constants.MAX_CONTROLLERS))
{
this.mitesControllers = new MITesReceiverController[this.sensors.TotalReceivers];
this.mitesDecoders = new MITesDecoder[this.sensors.TotalReceivers];
//this.aMITesActivityCounters = new Hashtable();
progressMessage += "Initializing MITes ... searching " + this.sensors.TotalReceivers + " receivers\r\n";
if (InitializeMITes(dataDirectory) == false)
{
MessageBox.Show("Exiting: You picked a configuration with " + this.sensors.TotalReceivers + " receivers. Please make sure they are attached to the computer.");
#if (PocketPC)
/*
bt.close();
*/
Application.Exit();
System.Diagnostics.Process.GetCurrentProcess().Kill();
#else
Environment.Exit(0);
Application.Exit();
#endif
}
}
//Setup the resize event for each different form
#if (PocketPC)
this.Resize += new EventHandler(OnResize);
#else
this.form1.Resize += new EventHandler(OnResizeForm1);
this.form1.FormClosing += new FormClosingEventHandler(form_FormClosing);
this.form2.Resize += new EventHandler(OnResizeForm2);
this.form2.FormClosing += new FormClosingEventHandler(form_FormClosing);
this.form3.Resize += new EventHandler(OnResizeForm3);
this.form3.FormClosing += new FormClosingEventHandler(form_FormClosing);
this.form4.Resize += new EventHandler(OnResizeForm4);
this.form4.FormClosing += new FormClosingEventHandler(form_FormClosing);
#endif
//Initialize the interface for reporting the quality of the MITes
//transmission
progressMessage += "Initializing MITes Quality GUI ...";
InitializeQualityInterface();
progressMessage += " Completed\r\n";
//Intialize the MITes performance tracking objects
for (int i = 0; i < MITesData.MAX_MITES_CHANNELS; i++)
MITesDataFilterer.MITesPerformanceTracker[i] = new MITesPerformanceStats(0);
foreach (Sensor sensor in this.sensors.Sensors)
{
int sensor_id = Convert.ToInt32(sensor.ID);
int receiver_id = Convert.ToInt32(sensor.Receiver);
if (sensor_id == 0) //HR sensor
{
MITesDataFilterer.MITesPerformanceTracker[sensor_id].GoodRate = (int)(Constants.HR_SAMPLING_RATE * 0.8);
MITesDataFilterer.MITesPerformanceTracker[sensor_id].PerfectRate = Constants.HR_SAMPLING_RATE;
}
else
{
int goodSamplingRate = 150;
MITesDataFilterer.MITesPerformanceTracker[sensor_id].GoodRate = goodSamplingRate;
MITesDataFilterer.MITesPerformanceTracker[sensor_id].PerfectRate = 180;
}
}
#if (PocketPC)
this.tabControl1.SelectedIndex = 0;
#endif
progressThreadQuit = true;
//remove unnecessary forms or pages
#if (PocketPC)
this.tabControl1.TabPages.RemoveAt(1);
this.tabControl1.TabPages.RemoveAt(2);
//this.tabControl1.TabPages.RemoveAt(3);
#else
this.ShowForms();
#endif
//Only enable the read data time since we are just calibrating
this.readDataTimer.Enabled = true;
}
