public override IEnumerable <string> Process(string fileName)
{
var result = new FileInfo(targetDir + "\\" + new FileInfo(fileName).Name + ".scancount").FullName;
Dictionary <string, int> scanTypeCount = new Dictionary <string, int>();
using (var reader = RawFileFactory.GetRawFileReader(fileName))
{
var firstScan = reader.GetFirstSpectrumNumber();
var lastScan = reader.GetLastSpectrumNumber();
for (int scan = firstScan; scan <= lastScan; scan++)
{
var msLevel = reader.GetMsLevel(scan);
var scanMode = reader.GetScanMode(scan);
var key = string.Format("MS{0}_{1}", msLevel, scanMode);
if (!scanTypeCount.ContainsKey(key))
{
scanTypeCount[key] = 1;
}
else
{
scanTypeCount[key] = scanTypeCount[key] + 1;
}
}
}
ScanCountFormat.WriteToFile(result, scanTypeCount);
return(new string[] { result });
}
protected override void DoAfterProcessing(string aPath, ConcurrentBag <string> result)
{
if (bMerge)
{
var counts = new Dictionary <string, int>();
foreach (var file in result)
{
var curCounts = ScanCountFormat.ReadFromFile(file);
foreach (var entry in curCounts)
{
if (!counts.ContainsKey(entry.Key))
{
counts[entry.Key] = entry.Value;
}
else
{
counts[entry.Key] = counts[entry.Key] + entry.Value;
}
}
}
var combineFile = new FileInfo(aPath + "\\scancount.xls").FullName;
ScanCountFormat.WriteToFile(combineFile, counts);
result.Add(combineFile);
}
}
