public CensusStringResult ReadFromFile(string fileName)
{
var result = new CensusStringResult();
result.Headers = CensusUtils.ReadHeaders(fileName);
result.Proteins = ReadProteins(fileName);
return(result);
}
public List <CensusPeptideItem> ReadPeptides(string filename)
{
var peptideMap = new Dictionary <string, CensusPeptideItem>();
List <string> headers = CensusUtils.ReadHeaders(filename);
InitFormat(headers);
using (var sr = new StreamReader(filename))
{
string lastLine;
while ((lastLine = sr.ReadLine()) != null)
{
lastLine = lastLine.Trim();
if (lastLine.StartsWith("S") || lastLine.StartsWith("&S"))
{
CensusPeptideItem pepItem = this.peptideFormat.ParseString(lastLine);
if (pepItem.Ratio != 0.0)
{
string longFilename = pepItem.Filename.LongFileName;
if (peptideMap.ContainsKey(longFilename))
{
continue;
}
else
{
peptideMap[longFilename] = pepItem;
}
}
}
}
}
return(new List <CensusPeptideItem>(peptideMap.Values));
}
