private void ProcessTest(string rawPath, string resultPath)
{
var reader = new XCaliburSpectrumReader(rawPath);
var settings = new SettingsData()
{
DefaultIntensityThreshold = 10000
};
var methodReader = new XCaliburMethodReader(rawPath);
var compounds = methodReader.ReadMethodData(settings);
var results = reader.ReadSpectraData(compounds);
if (results == null)
{
return;
}
CompoundData.WriteCombinedResultsToFile(resultPath, results, settings);
}
public void TestRoundTrip()
{
var defaultThreshold = 10000;
var filePath = ""; // @"F:\Temp\RandomFile.tsv";
var sha1 = ""; // @"123456789abcdef";
var settings = new SettingsData()
{
DefaultIntensityThreshold = 10000,
CompoundThresholdFilePath = filePath,
CompoundThresholdFileSha1Hash = sha1,
};
var asComment = "# " + settings.ConvertToTsvComment();
var parsedSettings = new SettingsData();
parsedSettings.PopulateFromTsvComment(asComment);
Assert.AreEqual(defaultThreshold, parsedSettings.DefaultIntensityThreshold);
Assert.AreEqual(filePath, parsedSettings.CompoundThresholdFilePath);
Assert.AreEqual(sha1, parsedSettings.CompoundThresholdFileSha1Hash);
Assert.True(settings.SettingsEquals(parsedSettings));
}
