public static void PrepareLabelFileWithLineNumber(string readFilePath, string writeFilePath)
{
StringBuilder sb = new StringBuilder();
if (File.Exists(readFilePath))
{
StreamReader sr1 = File.OpenText(readFilePath);
string s = "";
int counter = 1;
while ((s = sr1.ReadLine()) != null)
{
var lineOutput = counter++ + " " + s + "\n";
Console.WriteLine(lineOutput);
sb.Append(lineOutput);
}
sr1.Close();
}
else
{
Console.WriteLine("File not found");
Console.ReadLine();
}
Console.WriteLine();
File_Helper.WriteToFile(sb, writeFilePath);
}
static void Main(string[] args)
{
string currentDirectory = Path.GetDirectoryName(Path.GetDirectoryName(System.IO.Directory.GetCurrentDirectory()));
currentDirectory = currentDirectory.TrimEnd('\\');
currentDirectory = currentDirectory.Remove(currentDirectory.LastIndexOf('\\') + 1);
string BaseFilePath = Path.Combine(currentDirectory, "Files\\");
string today = DateTime.Now.ToString();
string sequesceFileName = Path.Combine(BaseFilePath, "sequence.txt");
string labelFileName = Path.Combine(BaseFilePath, "label.txt");
string labelFileNameWIthLine = Path.Combine(BaseFilePath, "lineNumber_label.txt");
string writeFilePath = Path.Combine(BaseFilePath, "result.txt");
string class_for_multiple_protein_plant = Path.Combine(BaseFilePath, "class_for_multiple_protein_GN.txt");
StreamReader sequesceFile = new StreamReader(sequesceFileName);
StreamReader labelFile = new StreamReader(labelFileName);
string line;
List <string> sequesceFilelines = new List <string>();
List <string> labelFilelines = new List <string>();
List <string> dataList = new List <string>();
while ((line = sequesceFile.ReadLine()) != null)
{
sequesceFilelines.Add(line);
}
while ((line = labelFile.ReadLine()) != null)
{
labelFilelines.Add(line);
}
sequesceFile.Close();
labelFile.Close();
//Dictionary<string, string> sequenceVsLabel = new Dictionary<string, string>();
List <string> result = new List <string>();
var duplicatesWithIndices = sequesceFilelines
.Select((Name, Index) => new { Name, Index })
.GroupBy(x => x.Name)
.Select(xg => new {
Name = xg.Key,
Indices = xg.Select(x => x.Index)
})
.Where(x => x.Indices.Count() > 1);
StringBuilder sb = new StringBuilder();
foreach (var g in duplicatesWithIndices)
{
string write = String.Format("{0} : {1} \n", g.Indices.ToArray()[0], string.Join(",", g.Indices.ToArray()));
Console.WriteLine(write);
sb.Append(write);
}
File_Helper.WriteToFile(sb, writeFilePath);
PrepareLabelFileWithLineNumber(labelFileName, labelFileNameWIthLine);
MultiClassPrepare(writeFilePath, class_for_multiple_protein_plant);
Console.WriteLine();
}
