public virtual void addSecondaryStructure(sbyte type, int indexStart, int indexEnd)
{
int structureCount = indexEnd - indexStart + 1;
if (structureCount < 1)
{
System.Console.Out.WriteLine("structure definition error\n" + " indexStart:" + indexStart + " indexEnd:" + indexEnd);
return ;
}
ProteinStructure proteinstructure = null;
switch (type)
{
case JmolConstants.PROTEIN_STRUCTURE_HELIX:
proteinstructure = new Helix(this, indexStart, structureCount);
break;
case JmolConstants.PROTEIN_STRUCTURE_SHEET:
if (this is AminoPolymer)
proteinstructure = new Sheet((AminoPolymer) this, indexStart, structureCount);
break;
case JmolConstants.PROTEIN_STRUCTURE_TURN:
proteinstructure = new Turn(this, indexStart, structureCount);
break;
default:
System.Console.Out.WriteLine("unrecognized secondary structure type");
return ;
}
for (int i = indexStart; i <= indexEnd; ++i)
monomers[i].Structure = proteinstructure;
}
public virtual void addSecondaryStructure(sbyte type, int indexStart, int indexEnd)
{
int structureCount = indexEnd - indexStart + 1;
if (structureCount < 1)
{
System.Console.Out.WriteLine("structure definition error\n" + " indexStart:" + indexStart + " indexEnd:" + indexEnd);
return;
}
ProteinStructure proteinstructure = null;
switch (type)
{
case JmolConstants.PROTEIN_STRUCTURE_HELIX:
proteinstructure = new Helix(this, indexStart, structureCount);
break;
case JmolConstants.PROTEIN_STRUCTURE_SHEET:
if (this is AminoPolymer)
{
proteinstructure = new Sheet((AminoPolymer)this, indexStart, structureCount);
}
break;
case JmolConstants.PROTEIN_STRUCTURE_TURN:
proteinstructure = new Turn(this, indexStart, structureCount);
break;
default:
System.Console.Out.WriteLine("unrecognized secondary structure type");
return;
}
for (int i = indexStart; i <= indexEnd; ++i)
{
monomers[i].Structure = proteinstructure;
}
}
