/* Disable this constructor -- there is no way right now to set file path & name in
* another way!
*
* /// <summary>
* /// Minimal constructor. Note that if you use this constructor, you must
* /// set filePath and fileName before calling init(), otherwise an exception
* /// will be raised.
* /// Also loads header from file.
* /// </summary>
* /// <param name="secondsPerStep">Interval between samples, in seconds or fraction thereof,
* /// e.g. 1 KHz = 1 ms per sample would have secondsPerStep = 0.001. If
* /// autoOutput is TRUE and the file header has its own sample period value,
* /// then this param is ignored and the value in the file header is used
* /// instead.</param>
* /// <param name="autoOutput">If TRUE, then we push data out to the Followers AND try to
* /// use the sample period value from the file header; if FALSE, we wait
* /// for whoever to pull out the data.</param>
* public FileReader ( double secondsPerStep, bool autoOutput )
* : base ( secondsPerStep, autoOutput )
* {
* }
* // */
/// <summary>
/// Full constructor: requires file path and file name.
/// Also loads header from file.
/// </summary>
/// <param name="secondsPerStep">Interval between samples, in seconds or fraction thereof,
/// e.g. 1 KHz = 1 ms per sample would have secondsPerStep = 0.001. If
/// autoOutput is TRUE and the file header has its own sample period value,
/// then this param is ignored and the value in the file header is used
/// instead.</param>
/// <param name="autoOutput">If TRUE, then we push data out to the Followers AND try to
/// use the sample period value from the file header; if FALSE, we wait
/// for whoever to pull out the data.</param>
/// <param name="filePath">Must be an existing file path, with or without trailing slash</param>
/// <param name="fileName">Must be an existing file name</param>
public FileReader(double secondsPerStep, bool autoOutput,
string filePath, string fileName)
: base(secondsPerStep, autoOutput)
{
// Save values:
fPath = FileHandler.cleanPath(filePath);
fName = FileHandler.cleanFileName(fileName);
fPathName = fPath + fName;
// Check for existing path:
FileHandler.validatePath(fPath);
// Make sure file does exist:
FileHandler.fileExists(fPathName);
// Try opening the new file for reading:
FileStream fs = File.OpenRead(fPathName);
fs.Close();
// Some inits:
// Create the appropriate data structure:
initValues = new ChainInfo();
initValues.patientInfo = new PatientInfo("", "", "");
initValues.dataInfo = new DataInfo();
initValues.fileInfo = new FileHandler();
// Read the header from the input file:
curReadStartPos = 0;
readHeader();
// Update the sampling period:
stepSize = initValues.samplingPeriodSec;
// Note, we now discard the header data and read it again at Init() time
}
/// <summary>
/// Override default behavior to:
/// - Save a local copy
/// - Get file header info
/// - Update iData accordingly
/// - Allow using header info to drive the output rates
/// </summary>
public override void init(ChainInfo iData)
{
// Save a local handle:
// - If we're AutoSending, we're the authority on the data, so we can override the
// contents of iData. That means we point to iData and modify that.
// - If we're not AutoSending, we can tell anyone downstream what the actual data
// params are, but we shouldn't mess with the original iData to avoid affecting
// the source.
if (autoSend)
{ // Point to the input data structure:
initValues = iData;
}
else
{ // Make our own data structure:
initValues = new ChainInfo();
initValues.samplingPeriodSec = iData.samplingPeriodSec;
}
if (autoSend && doneReading) // We terminated the timer earlier - restart it:
{
// Init the TimerThread:
sendTimer = new TimerThread(
new System.Threading.ThreadStart(this.next),
false);
}
// Init. what needs it:
curReadStartPos = 0;
doneReading = false;
dataFinished = false; // in case it was set to true previously
if (initValues.patientInfo == null)
{
initValues.patientInfo = new PatientInfo("", "", "");
}
if (initValues.dataInfo == null)
{
initValues.dataInfo = new DataInfo( );
}
if (initValues.fileInfo == null)
{
initValues.fileInfo = new FileHandler( );
}
// Read the header from the input file:
readHeader();
// Init. the sampling period:
this.stepSize = initValues.samplingPeriodSec;
// Init output buffer:
initBuffer();
// Apply values and propagate downstream:
base.init(iData); // iData may have been changed or not
}
/// <summary>
/// Creates a duplicate copy of this object and all its data.
/// </summary>
/// <returns>A new ChainInfo object identical to this one</returns>
public ChainInfo clone()
{
ChainInfo newData = new ChainInfo();
newData.samplingPeriodSec = this.samplingPeriodSec;
newData.patientInfo = this.pInfo.clone();
newData.dataInfo = this.dInfo.clone();
newData.fileInfo = this.fInfo.clone();
return(newData);
}
/// <summary>
/// Initializes the current object with whatever params it needs, and
/// propagates the initialization to all its followers.
/// </summary>
/// <param name="iData">number of seconds between data samples, e.g. 1 millisec = 0.001</param>
public virtual void init(ChainInfo iData)
{
// Throw exception if null:
if (iData == null)
{
throw new ArgumentNullException("iData", "iData cannot be null!");
}
// Throw exception if samplingPeriod is not reasonable:
if (iData.samplingPeriodSec <= 0.0) // Must be > 0!
{
throw new ArgumentOutOfRangeException("iData", iData,
"iData.samplingPeriodSec (the number of seconds between data samples) "
+ "must be greater than zero!");
}
// Retrieve what we need:
stepPeriod = iData.samplingPeriodSec;
// Save (a handle to) the whole thing:
initVals = iData; // NOTE: THE TARGET DATA IS SUBJECT TO BEING CHANGED ELSEWHERE!
IReceiver follower;
for (int i = 0; i < followers.Count; i++)
{
try
{
follower = (IReceiver)followers[i];
}
catch
{ // An exception means, followers got changed at just the wrong time
// AND it no longer has an i(th) element
follower = null;
}
if (follower != null)
{
follower.init(iData);
}
}
//lock ( followers )
//{
// foreach ( object cur in followers )
// {
// follower = (IReceiver) cur;
// follower.init ( iData );
// }
//}
}
/// <summary>
/// Initialize the data run with the appropriate info/parameters.
/// Note that a class should tolerate multiple init(...) calls without being destroyed
/// then re-instantiated, and there should be nothing carried over from a previous run
/// after init(...) has returned.
/// </summary>
/// <param name="iData">An object containing all necessary/relevant data for this
/// data run.</param>
public override void init(ChainInfo iData)
{
base.init(iData);
// Re-Init the two progress indicators:
lastStep = 0;
lastOutput = DateTime.Now;
if (autoSend)
{
// Start the TimerThread now:
// - If the step period is less than 0.02 seconds, then only execute
// every 0.02 seconds, to avoid overloading the system:
if ((stepPeriod * 1000.0) < minTimerIntervalMSec)
{
sendTimer.Start(minTimerIntervalMSec); // 20 ms. = 0.02 sec. = 50 Hz
}
else
{
sendTimer.Start((long)(this.stepPeriod * 1000));
}
}
}
private void setInitValueByTag(ChainInfo initSet, ChainInfo.tagValuePair tagVal)
{
// Get the tag:
ChainInfo.varTags tag = ChainInfo.getTagFromValue(tagVal.tagName);
// Set appropriately -- try ChainInfo first:
bool matched = initSet.setByTag(tag, tagVal.tagValue);
if (!matched) // It was not an ChainInfo, try DataInfo:
{
matched = initSet.dataInfo.setByTag(tag, tagVal.tagValue);
}
if (!matched) // Not a DataInfo, try a PatientInfo
{
matched = initSet.patientInfo.setByTag(tag, tagVal.tagValue);
}
if (!matched)
{
matched = initSet.fileInfo.setByTag(tag, tagVal.tagValue);
}
if (!matched)
{
// None of the above -- ????
}
}
/// <summary>
/// Initialize the object; if this is .
/// </summary>
/// <param name="iData">Passed up only</param>
public override void init(ChainInfo iData)
{
iData.samplingPeriodSec = stepSize; // Init. the sampling period
base.init(iData);
}
/// <summary>
/// Override default behavior to:
/// - Save a local copy
/// - Get file header info
/// - Update iData accordingly
/// - Allow using header info to drive the output rates.
/// <para>NOTE: This method call GC.Collect() to force garbage collection on the
/// managed-code environment. If you are running unmanaged code, before calling
/// this method you must ensure that your unmanaged storage allocations are properly
/// protected or released.</para>
/// </summary>
public override void init(ChainInfo iData)
{
string errMsg = null;
// Reset THOROUGHLY:
GC.Collect();
GC.WaitForPendingFinalizers();
WfdbAccess.CloseWfdb();
GC.Collect();
GC.WaitForPendingFinalizers();
// Read record header:
siArray = WfdbAccess.GetSigInfoArray(numSignals, ref errMsg);
bool result = WfdbAccess.GetSignalInfo(recordName, siArray, numSignals, ref errMsg);
if (!result)
{
//System.Windows.Forms.MessageBox("Unable to access header for record '" + recordName + "' in path '" + searchPath + "'!");
Exception ex = new ArgumentException("Unable to access header for record '" + recordName + "' in path '" + searchPath + "'.");
throw ex;
}
// Read useful info from header:
WFDB_Siginfo sigInfo = siArray.getitem(0);
buffSize = sigInfo.spf;
frameBuffer = new int[buffSize];
numSamples = sigInfo.nsamp * sigInfo.spf;
sigName = sigInfo.desc;
//sampFreq = WfdbAccess.GetSamplingFrequency(recordName);
//if (sampFreq < 1)
//{ // Problem reading header!
// //System.Windows.Forms.MessageBox("Unable to access record '" + recordName + "' in path '" + searchPath + "'!");
// Exception ex = new ArgumentException("Unable to access header for record '" + recordName + "' in path '" + searchPath + "'.");
// throw ex;
//}
adcZeroRef = sigInfo.adczero;
adcResBits = sigInfo.adcres;
adcMaxValue = (int)Math.Pow(2, adcResBits);
baseline = sigInfo.baseline;
ampGain = sigInfo.gain;
if (ampGain == 0)
{ // Use default:
ampGain = 200;
}
dataUnits = sigInfo.units;
if ((dataUnits == null) || (dataUnits.Length == 0))
{ // Assign arbitrarily?
dataUnits = "mV";
}
// Save a local handle:
if (autoSend)
{ // Point to the input data structure:
initValues = iData;
}
else
{ // Make our own data structure:
initValues = new ChainInfo();
initValues.samplingPeriodSec = iData.samplingPeriodSec;
}
if (autoSend && doneReading) // We previously terminated the timer - restart it:
{ // Init the TimerThread:
sendTimer = new TimerThread(
new System.Threading.ThreadStart(this.next),
true);
}
// Init. what needs it:
dispSamples = 0; // just started, nothing retrieved yet
doneReading = false;
if (initValues.patientInfo == null)
{
initValues.patientInfo = new PatientInfo("", "", "");
}
if (initValues.dataInfo == null)
{
initValues.dataInfo = new DataInfo(sigInfo.desc, DateTime.Now.ToString());
}
// And, apply the REAL values:
initValues.dataInfo.BitsPerSample = adcResBits;
initValues.dataInfo.ScaleMultiplier = ampGain.ToString();
if (adcResBits == 0)
{ // Missing some info -- go with a default:
initValues.dataInfo.FullScaleReferenceVoltage = "2.0";
initValues.dataInfo.ZeroOffset = "0.0";
initValues.dataInfo.ZeroReferenceVoltage = "-2.0";
}
else
{
initValues.dataInfo.FullScaleReferenceVoltage = ((adcMaxValue - baseline) / ampGain).ToString();
initValues.dataInfo.ZeroOffset = baseline.ToString();
initValues.dataInfo.ZeroReferenceVoltage = (-baseline / ampGain).ToString();
}
initValues.dataInfo.ValueUnits = dataUnits;
if (initValues.fileInfo == null)
{
initValues.fileInfo = new FileHandler();
}
if (initValues.samplingPeriodSec != stepSize)
{
// Update the sampling period:
initValues.samplingPeriodSec = stepSize;
}
//// Init. the sampling period:
//this.stepSize = initValues.samplingPeriodSec;
// Init output buffer:
ReadBuffer();
// Apply values and propagate downstream:
base.init(iData); // iData may have been changed or not
}
/// <summary>
/// Returns the tag that the given value corresponds to, or throws an
/// exception if there is no match.
/// Note that the match must be exact and case-sensitive!
/// </summary>
/// <param name="tagValue">Tag Value to match to varTags tags</param>
/// <returns>The appropriate tag; throws an exception if no match.
/// Note that the match must be exact and case-sensitive!</returns>
public static ChainInfo.varTags getTagFromLabel(string tagValue)
{
return(ChainInfo.getTagFromValue(tagValue));
}
/// <summary>
/// Initialize myself.
/// </summary>
/// <param name="iData"></param>
public void init(ChainInfo iData)
{
lastRefresh = DateTime.Now;
}