/// <summary>
/// Toggles the frozen status of a single gene if possible.
/// </summary>
/// <param name="genome">The genome to be mutated.</param>
/// <param name="rando">A random number generator.</param>
public static void MutateToggleFreeze(Genome genome, Random rando)
{
int geneId = rando.Next(genome.Size());
Gene gene = genome.Genes[geneId];
gene.Frozen = !gene.Frozen;
if (!genome.Validate(true))
{
gene.Frozen = !gene.Frozen;
}
}
/// <summary>
/// Yarr... this be copied almost exactly as the original NEAT.
/// In the original NEAT, none of the settings had chance this would happen.
/// </summary>
/// <param name="style">The specific type of multi-point mating style.</param>
/// <param name="mother">A parent genome.</param>
/// <param name="father">A parent genome.</param>
/// <param name="rando">A random number generator.</param>
/// <returns>A product of the given multi-point mating style.</returns>
private static Genome MateSinglePoint(MatingStyle style, Genome mother, Genome father, Random rando)
{
mother.SortGenesByConnectionId();
father.SortGenesByConnectionId();
Genome largerParent = mother;
Genome smallerParent = father;
if (father.Size() > mother.Size())
{
largerParent = father;
smallerParent = mother;
}
List <Gene> childGenes = new List <Gene>();
int largerIndex = 0;
int smallerIndex = 0;
int crossoverPoint = rando.Next(smallerParent.Size());
int crossoverCounter = 0;
while (smallerParent.Size() != smallerIndex)
{
Gene chosenGene = new Gene();
if (largerIndex == largerParent.Size())
{
chosenGene.Copy(smallerParent.Genes[smallerIndex]);
smallerIndex++;
}
else if (smallerIndex == smallerParent.Size())
{
//Should never happen
chosenGene.Copy(largerParent.Genes[largerIndex]);
largerIndex++;
}
else
{
int largerGeneId = largerParent.Genes[largerIndex].Id;
int smallerGeneId = smallerParent.Genes[smallerIndex].Id;
if (largerGeneId == smallerGeneId)
{
if (crossoverCounter < crossoverPoint)
{
chosenGene.Copy(largerParent.Genes[largerIndex]);
}
else if (crossoverCounter > crossoverPoint)
{
chosenGene.Copy(smallerParent.Genes[smallerIndex]);
}
else
{
switch (style)
{
case MatingStyle.SinglePoint:
//Function is equivalent to what is needed here despite the misleading name.
MateMultiPointAverage(chosenGene, largerParent.Genes[largerIndex], smallerParent.Genes[smallerIndex], rando);
break;
default:
throw new Exception("MateSinglePoint was not given a valid mating style.");
}
}
chosenGene.Frozen = false;
//The NEAT implementation did not call for a chance this would happen. It just did it. [ NEAT.1.2.1 => Genome::mate_singlepoint(...) ]
if (largerParent.Genes[largerIndex].Frozen || smallerParent.Genes[smallerIndex].Frozen)
{
chosenGene.Frozen = true;
}
largerIndex++;
smallerIndex++;
crossoverCounter++;
}
else if (largerGeneId < smallerGeneId)
{
if (crossoverCounter < crossoverPoint)
{
chosenGene.Copy(largerParent.Genes[largerIndex]);
largerIndex++;
crossoverCounter++;
}
else
{
chosenGene.Copy(smallerParent.Genes[smallerIndex]);
smallerIndex++;
}
}
else
{
smallerIndex++;
continue;
}
}
if (GeneIsUnique(chosenGene, childGenes))
{
childGenes.Add(chosenGene);
}
}
return(new Genome(childGenes));
}
/// <summary>
/// Classic compatibility function as implemented in the original NEAT.
/// </summary>
/// <param name="p1">The first genome.</param>
/// <param name="p2">The second genome.</param>
/// <returns>A measure of how far apart the two Genomes are.</returns>
public static double Compatibility(Genome p1, Genome p2)
{
p1.SortGenesByConnectionId();
p2.SortGenesByConnectionId();
int p1Gene = 0;
int p2Gene = 0;
int p1End = p1.Size();
int p2End = p2.Size();
int disjointCount = 0;
int excessCount = 0;
int commonGeneCount = 0;
double totalWeightDifferences = 0;
while (p1Gene != p1End || p2Gene != p2End)
{
if (p1Gene == p1End)
{
p2Gene++;
excessCount++;
}
else if (p2Gene == p2End)
{
p1Gene++;
excessCount++;
}
else
{
Gene g1 = p1.Genes[p1Gene];
Gene g2 = p2.Genes[p2Gene];
if (g1.Id == g2.Id)
{
commonGeneCount++;
totalWeightDifferences += Math.Abs(g1.Weight - g2.Weight);
p1Gene++;
p2Gene++;
}
else if (g1.Id < g2.Id)
{
disjointCount++;
p1Gene++;
}
else
{
disjointCount++;
p2Gene++;
}
}
}
int N = 1;
if (p1End >= GenomeSizeNormalizationThresh || p2End >= GenomeSizeNormalizationThresh)
{
N = Math.Max(p1End, p2End);
}
double ret =
DisjointCoefficient * disjointCount / N +
ExcessCoefficient * excessCount / N +
AvgWeightDiffCoefficient * (totalWeightDifferences / commonGeneCount);
return(ret);
}