public AnalysisGraphEventArgs(AnalysisGraph graph)
{
AnalysisGraph = graph;
}
public void BuildAnalysisGraph(AnalysisConfig config)
{
var graph = new AnalysisGraph();
// Create a feature database
if (config.ShouldCreateFeatureDatabaseOnly)
{
graph.AddNode(CreateNode(AnalysisStep.FindFeatures, "Feature Creation",
"Creates or loads features from deisotoped data."));
}
else
{
if (config.ShouldLoadMTDB)
{
var node = new AnalysisGraphNode
{
Name = "Load MTDB",
Description = "Loads an AMT Tag Database for alignment or peptide identification",
CurrentStep = AnalysisStep.LoadMtdb,
Method =
config.InitialStep == AnalysisStep.FindFeatures
? CreateMtdb
: new DelegateAnalysisMethod(LoadMtdb)
};
graph.AddNode(node);
}
switch (config.InitialStep)
{
case AnalysisStep.LoadMtdb:
case AnalysisStep.FindFeatures:
graph.AddNode(CreateNode(AnalysisStep.FindFeatures, "Feature Creation And Alignment",
"Creates or loads features from deisotoped data and aligns them to a baseline."));
graph.AddNode(CreateNode(AnalysisStep.Clustering, "Cluster Features",
"Clusters features across datasets."));
graph.AddNode(CreateNode(AnalysisStep.PeakMatching, "Feature Identification",
"Matches features to an AMT Tag database."));
break;
case AnalysisStep.Alignment:
graph.AddNode(CreateNode(AnalysisStep.Alignment, "Feature Alignment",
"Aligns features to a reference to correct for systematic errors."));
graph.AddNode(CreateNode(AnalysisStep.Clustering, "Cluster Features",
"Clusters features across datasets."));
graph.AddNode(CreateNode(AnalysisStep.PeakMatching, "Feature Identification",
"Matches features to an AMT Tag database."));
break;
case AnalysisStep.Clustering:
graph.AddNode(CreateNode(AnalysisStep.Clustering, "Cluster Features",
"Clusters features across datasets."));
graph.AddNode(CreateNode(AnalysisStep.PeakMatching, "Feature Identification",
"Matches features to an AMT Tag database."));
break;
case AnalysisStep.PeakMatching:
graph.AddNode(CreateNode(AnalysisStep.PeakMatching, "Feature Identification",
"Matches features to an AMT Tag database."));
break;
}
}
config.AnalysisGraph = graph;
}