/// <summary>
/// Activity class includes both a class name (High, Medium, Low) and an activity color (Green to Red)
/// and is calculated from ActivityBin
/// </summary>
public void SetActivityClass()
{
UnpivotedAssayResult sRow = this;
int bin = sRow.ActivityBin;
StringMx sx = new StringMx();
if (bin < 0)
{
sx.Value = "Missing Data";
sx.BackColor = CondFormat.CsfUndefined;
}
else if (bin <= 3)
{
sx.Value = "Fail";
sx.BackColor = CondFormat.CsfRed;
}
else if (bin <= 6)
{
sx.Value = "BorderLine";
sx.BackColor = CondFormat.CsfYellow;
}
else
{
sx.Value = "Pass";
sx.BackColor = CondFormat.CsfGreen;
}
sRow.ActivityClass = sx;
return;
}
/// <summary>
/// Set the activity bin for the row (now set in SQL)
/// </summary>
public void SetActivityBin(
QualifiedNumber resultValueQn,
double resultNumericValue,
out int activityBin)
{
UnpivotedAssayResult sRow = this;
double val = 0;
if (resultNumericValue > 0) // use numeric value if we have it
{
val = resultNumericValue;
}
else if (resultValueQn != null && resultValueQn.NumberValue > 0) // otherwise use any qualified number numeric value
{
val = resultValueQn.NumberValue;
}
if (val <= 0)
{
activityBin = 0; // no valid value
}
else if (Lex.Eq(sRow.ResultTypeConcType, "SP"))
{ // calc SP activity bin
double crc = ConvertSPToCRC(val, sRow.Conc);
activityBin = CalcCRCActivityBin(crc);
}
else // calc CRC activity bin
{
activityBin = CalcCRCActivityBin(val);
}
}
/// <summary>
/// Convert a value object[] into a new UnpivotedAssayResult
/// </summary>
/// <param name="vo"></param>
/// <param name="voi"></param>
/// <returns></returns>
new public static UnpivotedAssayResult FromValueObjectNew(
object[] vo,
UnpivotedAssayResultFieldPositionMap voMap)
{
UnpivotedAssayResult row = new UnpivotedAssayResult();
row.FromValueObject(vo, voMap);
return(row);
}
/// <summary>
/// Lookup predefined conditional formatting by name
/// </summary>
/// <param name="cfName"></param>
/// <returns></returns>
public static CondFormat GetPredefined(string cfName)
{
CondFormat cf = null;
cfName = cfName.ToUpper();
if (Lex.Eq(cfName, "Activity Class Conditional Formatting") || Lex.Eq(cfName, "ActivityClassCondFormat")) // special internal format
{
cf = UnpivotedAssayResult.BuildActivityClassCondFormat();
return(cf);
}
else if (Lex.Eq(cfName, "Activity Bin Conditional Formatting") || Lex.Eq(cfName, "ActivityBinCondFormat")) // special internal format
{
cf = UnpivotedAssayResult.BuildActivityBinCondFormat();
return(cf);
}
else if (Lex.StartsWith(cfName, "CONDFORMAT_"))
{
if (PredefinedDict == null) // need to build?
{
if (InterfaceRefs.IUserObjectTree == null)
{
return(null);
}
List <UserObject> uoList = InterfaceRefs.IUserObjectTree.GetUserObjectsByType(UserObjectType.CondFormat);
if (uoList == null)
{
return(null);
}
PredefinedDict = new Dictionary <string, string>();
foreach (UserObject uo0 in uoList)
{
PredefinedDict[uo0.InternalName.ToUpper()] = uo0.Content;
}
}
if (!PredefinedDict.ContainsKey(cfName))
{
return(null);
}
cf = CondFormat.Deserialize(PredefinedDict[cfName]);
return(cf);
}
else
{
return(null);
}
}
new public void ToValueObject(
object[] vo,
UnpivotedAssayResultFieldPositionMap voMap)
{
base.ToValueObject(vo, voMap); // set the basic attribute values
UnpivotedAssayResult row = this;
//if (row.ResultValue != null) row = row; // debug
SetVo(vo, voMap.CompoundId.Voi, row.CompoundId);
SetVo(vo, voMap.Structure.Voi, row.Structure);
SetVo(vo, voMap.ActivityBin.Voi, row.ActivityBin);
SetVo(vo, voMap.ActivityClass.Voi, row.ActivityClass);
SetVo(vo, voMap.ResultValueQn.Voi, row.ResultValue);
SetVo(vo, voMap.ResultQualifier.Voi, row.ResultQualifier);
SetVo(vo, voMap.ResultNumericValue.Voi, row.ResultNumericValue);
SetVo(vo, voMap.ResultTextValue.Voi, row.ResultTextValue);
SetVo(vo, voMap.NValue.Voi, row.NValue);
SetVo(vo, voMap.NValueTested.Voi, row.NValueTested);
SetVo(vo, voMap.StdDev.Voi, row.StdDev);
SetVo(vo, voMap.Units.Voi, row.Units);
SetVo(vo, voMap.Conc.Voi, row.Conc);
SetVo(vo, voMap.ConcUnits.Voi, row.ConcUnits);
SetVo(vo, voMap.RunDate.Voi, row.RunDate);
SetVo(vo, voMap.MostPotentValueQn.Voi, row.MostPotentVal);
SetVo(vo, voMap.ActivityBinMostPotent.Voi, row.ActivityBinMostPotent);
StringMx sx = new StringMx(row.ResultDetail); // put link to cid, targetId & resultType
sx.DbLink = "'" + row.CompoundId + "','" + row.GeneId + "','" + row.ResultTypeConcType + "'";
SetVo(vo, voMap.ResultDetailId.Voi, sx);
//SetVo(vo, voMap.TargetMapX.Voi, row.TargetMapX);
//SetVo(vo, voMap.TargetMapY.Voi, row.TargetMapY);
SetVo(vo, voMap.Sources.Voi, row.Sources);
SetVo(vo, voMap.DrawingOrder.Voi, row.DrawingOrder);
SetVo(vo, voMap.CidOrder.Voi, row.CidOrder);
return;
}
/// <summary>
/// Put row values into standard form
/// </summary>
/// <param name="r"></param>
public void NormalizeValues()
{
string msg;
UnpivotedAssayResult r = this;
// Normalize SP concentrations to micromolar units
if (String.IsNullOrEmpty(r.ConcUnits) && r.AssayName != null)
{ // if no conc in data try to get from assay name
Match m = Regex.Match(r.AssayName, "(\\d+\\.*\\d*) ?(uM|mM|nM)", RegexOptions.IgnoreCase);
if (m.Success)
{
r.ConcUnits = m.Groups[2].Value;
r.Conc = double.Parse(m.Groups[1].Value);
}
}
// Normalize SP concentrations to micromolar units
if (!String.IsNullOrEmpty(r.ConcUnits) && r.Conc > 0)
{
if (Lex.Eq(r.ConcUnits, "mM"))
{
r.Conc *= 1000.0;
r.ConcUnits = "uM";
}
else if (Lex.Eq(r.ConcUnits, "nM"))
{
r.Conc /= 1000.0;
r.ConcUnits = "uM";
}
else if (Lex.Ne(r.ConcUnits, "uM"))
{
msg = "Can't convert units: " + r.ConcUnits;
}
}
// Normalize CRC concentrations to micromolar units
if (Lex.Eq(r.ResultTypeConcType, "CRC"))
{
if (Lex.Eq(r.Units, "mM"))
{
if (r.ResultNumericValue != NullValue.NullNumber)
{
r.ResultNumericValue *= 1000.0;
}
if (r.ResultValue != null && r.ResultValue.NumberValue != NullValue.NullNumber)
{
r.ResultValue.NumberValue *= 1000.0;
}
if (r.StdDev > 0)
{
r.StdDev *= 1000.0;
}
r.Units = "uM";
}
else if (Lex.Eq(r.Units, "nM"))
{
if (r.ResultNumericValue != NullValue.NullNumber)
{
r.ResultNumericValue /= 1000.0;
}
if (r.ResultValue != null && r.ResultValue.NumberValue != NullValue.NullNumber)
{
r.ResultValue.NumberValue /= 1000.0;
}
if (r.StdDev > 0)
{
r.StdDev /= 1000.0;
}
r.Units = "uM";
}
else if (Lex.Ne(r.Units, "uM"))
{
msg = "Can't convert units: " + r.Units;
}
}
return;
}
/// <summary>
/// Convert a value object[] into a ResultsRow
/// </summary>
/// <param name="vo"></param>
/// <param name="voi"></param>
/// <returns></returns>
new public void FromValueObject(
object[] vo,
UnpivotedAssayResultFieldPositionMap voMap)
{
string txt;
int i1;
double d1;
DateTime dt;
base.FromValueObject(vo, voMap);
UnpivotedAssayResult row = this;
row.CompoundId = GetStringVo(vo, voMap.CompoundId.Voi);
row.Structure = GetStructureVo(vo, voMap.Structure.Voi);
row.ActivityBin = GetIntVo(vo, voMap.ActivityBin.Voi);
row.ActivityClass = GetSxVo(vo, voMap.ActivityClass.Voi);
row.ResultValue = GetQnVo(vo, voMap.ResultValueQn.Voi);
if (!NullValue.IsNull(row.ResultValue))
{ // copy values to individual fields in case not in the vo
row.ResultQualifier = row.ResultValue.Qualifier;
row.ResultNumericValue = row.ResultValue.NumberValue;
row.ResultTextValue = row.ResultValue.TextValue;
row.NValue = row.ResultValue.NValue;
row.NValueTested = row.ResultValue.NValueTested;
row.StdDev = row.ResultValue.StandardDeviation;
row.StdErr = row.ResultValue.StandardError;
}
txt = GetStringVo(vo, voMap.ResultQualifier.Voi);
if (txt != null)
{
row.ResultQualifier = txt;
}
d1 = GetDoubleVo(vo, voMap.ResultNumericValue.Voi);
if (d1 != NullValue.NullNumber)
{
row.ResultNumericValue = d1;
}
txt = GetStringVo(vo, voMap.ResultTextValue.Voi);
if (txt != null)
{
row.ResultTextValue = txt;
}
i1 = GetIntVo(vo, voMap.NValue.Voi);
if (d1 != NullValue.NullNumber)
{
row.NValue = i1;
}
i1 = GetIntVo(vo, voMap.NValueTested.Voi);
if (i1 != NullValue.NullNumber)
{
row.NValueTested = i1;
}
d1 = GetDoubleVo(vo, voMap.StdDev.Voi);
if (d1 != NullValue.NullNumber)
{
row.StdDev = d1;
}
row.Units = GetStringVo(vo, voMap.Units.Voi);
row.Conc = GetDoubleVo(vo, voMap.Conc.Voi);
row.ConcUnits = GetStringVo(vo, voMap.ConcUnits.Voi);
row.RunDate = GetDateVo(vo, voMap.RunDate.Voi);
row.MostPotentVal = GetQnVo(vo, voMap.MostPotentValueQn.Voi);
row.ActivityBinMostPotent = GetIntVo(vo, voMap.ActivityBinMostPotent.Voi);
row.ResultDetail = GetStringVo(vo, voMap.ResultDetailId.Voi);
//row.TargetMapX = GetIntVo(vo, voMap.TargetMapX.Voi);
//row.TargetMapY = GetIntVo(vo, voMap.TargetMapY.Voi);
row.Sources = GetStringVo(vo, voMap.Sources.Voi);
row.DrawingOrder = GetDoubleVo(vo, voMap.DrawingOrder.Voi);
row.CidOrder = GetIntVo(vo, voMap.CidOrder.Voi);
return;
}