public IMoleculeBuilder GetMoleculeBySBMLId(string sbmlSpeciesId)
{
var moleculeInformation = MoleculeInformation.FirstOrDefault(info => info.SpeciesIds.Exists(s => s == sbmlSpeciesId));
if (moleculeInformation == null)
{
return(null);
}
var molecule = moleculeInformation.GetMoleculeBuilder();
return(molecule);
}
/// <summary>
/// Creates a Molecule.
/// </summary>
private void CreateMolecule(Species species, string name, bool existant)
{
if (existant)
{
name = name + _counter;
_counter++;
}
var mbuilder = _moleculeBuilderFactory.Create(MoleculeBuildingBlock.FormulaCache)
.WithName(name)
.WithDescription(SBMLConstants.SBML_NOTES + species.getNotesString() + species.getId());
var molInfo = new MoleculeInformation(species, mbuilder);
_sbmlInformation.MoleculeInformation.Add(molInfo);
var container = GetContainerFromCompartment_(species.getCompartment());
if (container != null)
{
molInfo.AddContainer(container);
}
MoleculeBuildingBlock.Add(mbuilder);
}
