private void OutEdge(MetaNode n1, MetaNode n2, bool DifferentOrientation, int Right, uint weight)
{
SW.Write(@"<edge source='n" + n1.NodeNumber.ToString() + "' target='n" + n2.NodeNumber.ToString() + @"'>
<data key='E-DifferentOrientation'>" + DifferentOrientation.ToString() + @"</data>
<data key='E-Weight'>" + weight.ToString() + @"</data>
<data key='E-GoingRight'>" + Right.ToString() + @"</data>
</edge>
");
}
private void OutNode(MetaNode node)
{
SW.Write(@"<node id='n" + node.NodeNumber.ToString() + @"'>
<data key='V-AvgKmerCoverage'>" + node.AvgKmerCoverage.ToString() + @"</data>
<data key='V-NodeCount'> " + node.ConstituentNodes.Count.ToString() + @"</data>
<data key='V-Sequence'>" + node.Sequence + @"</data>
<data key='V-LowRefPos'>" + node.Lowest_Reference_Position.ToString() + @"</data>
<data key='V-HighRefPos'>" + node.Highest_Reference_Position.ToString() + @"</data>
</node>
");
}
/// <summary>
/// Condense redundant paths down to simple paths
/// </summary>
/// <returns>List of simple paths.</returns>
private void CreateMetaNodes()
{
_graph.SetNodeVisitState(false);
//First step now, condense all nodes into "MetaNodes" that are linearly connected.
//Note: Loop avoids stack overflow.
foreach (DeBruijnNode node in _graph.GetNodes())
{
if (node.IsVisited)
{
continue;
}
else
{
var metaNode = new MetaNode(node, _graph);
MetaNodes.Add(metaNode);
}
}
}
/// <summary>
/// Initializes a new instance of the <see cref="PieSlice"/> class.
/// </summary>
/// <param name="label">
/// The label.
/// </param>
/// <param name="value">
/// The value.
/// </param>
/// <param name="fill">
/// The fill.
/// </param>
public GenomeSlice(MetaNode node)
{
this.Label = "N-" + node.NodeNumber.ToString();
this.pnode = node;
node.parentSlice = this;
}