public async Task GivenATransactionContextAndImagingStudyWithExistingEndpointReference_WhenProcessedForStudy_ThenEndpointResourceIsNotAddedAsync()
{
ImagingStudy imagingStudy = FhirResourceBuilder.CreateNewImagingStudy(DefaultStudyInstanceUid, new List <string>()
{
DefaultSeriesInstanceUid
}, new List <string>()
{
DefaultSopInstanceUid
}, DefaultPatientResourceId);
Endpoint endpoint = FhirResourceBuilder.CreateEndpointResource();
var endpointResourceId = new ServerResourceId(ResourceType.Endpoint, endpoint.Id);
var endpointReference = endpointResourceId.ToResourceReference();
FhirTransactionContext context = FhirTransactionContextBuilder.DefaultFhirTransactionContext(FhirTransactionContextBuilder.CreateDicomDataset());
context.Request.Endpoint = FhirTransactionRequestEntryGenerator.GenerateDefaultNoChangeRequestEntry <Endpoint>(endpointResourceId);
imagingStudy.Endpoint.Add(endpointReference);
await _imagingStudyPropertySynchronizer.SynchronizeAsync(context, imagingStudy);
Assert.Collection(
imagingStudy.Endpoint,
endPoint => Assert.Equal(endpointReference, endPoint));
}
public async Task GivenATransactionContexAndImagingStudyWithNewAccessionNumber_WhenProcessedForStudy_ThenNewAccessionNumberIsAddedAsync()
{
ImagingStudy imagingStudy = FhirResourceBuilder.CreateNewImagingStudy(DefaultStudyInstanceUid, new List <string>()
{
DefaultSeriesInstanceUid
}, new List <string>()
{
DefaultSopInstanceUid
}, DefaultPatientResourceId);
FhirTransactionContext context = FhirTransactionContextBuilder.DefaultFhirTransactionContext(FhirTransactionContextBuilder.CreateDicomDataset());
await _imagingStudyPropertySynchronizer.SynchronizeAsync(context, imagingStudy);
Assert.Collection(
imagingStudy.Identifier,
identifier => ValidationUtility.ValidateIdentifier("urn:dicom:uid", $"urn:oid:{DefaultStudyInstanceUid}", identifier), // studyinstanceUid
identifier => ValidationUtility.ValidateAccessionNumber(null, FhirTransactionContextBuilder.DefaultAccessionNumber, identifier)); // accession number
FhirTransactionContext newConText = FhirTransactionContextBuilder.DefaultFhirTransactionContext(FhirTransactionContextBuilder.CreateDicomDataset(accessionNumber: NewAccessionNumber));
await _imagingStudyPropertySynchronizer.SynchronizeAsync(newConText, imagingStudy);
Assert.Collection(
imagingStudy.Identifier,
identifier => ValidationUtility.ValidateIdentifier("urn:dicom:uid", $"urn:oid:{DefaultStudyInstanceUid}", identifier), // studyinstanceUid
identifier => ValidationUtility.ValidateAccessionNumber(null, FhirTransactionContextBuilder.DefaultAccessionNumber, identifier), // accession number
identifier => ValidationUtility.ValidateAccessionNumber(null, NewAccessionNumber, identifier)); // new accession number
}
public void GivenATransactionContexAndImagingStudy_WhenProcessedForStudy_ThenDicomPropertiesAreCorrectlyMappedtoImagingStudy()
{
ImagingStudy imagingStudy = FhirResourceBuilder.CreateNewImagingStudy(DefaultStudyInstanceUid, new List <string>()
{
DefaultSeriesInstanceUid
}, new List <string>()
{
DefaultSopInstanceUid
}, DefaultPatientResourceId);
FhirTransactionContext context = FhirTransactionContextBuilder.DefaultFhirTransactionContext(FhirTransactionContextBuilder.CreateDicomDataset());
_imagingStudyPropertySynchronizer.Synchronize(context, imagingStudy);
Assert.Collection(
imagingStudy.Endpoint,
reference => string.Equals(reference.Reference, context.Request.Endpoint.Resource.ToString(), StringComparison.Ordinal));
Assert.Collection(
imagingStudy.Modality,
modality => string.Equals(modality.Code, "MODALITY", StringComparison.Ordinal));
Assert.Collection(
imagingStudy.Note,
note => string.Equals(note.Text.ToString(), "Study Description", StringComparison.Ordinal));
Assert.Equal(new FhirDateTime(1974, 7, 10, 7, 10, 24, TimeSpan.Zero), imagingStudy.StartedElement);
}
public async Task GivenATransactionContexAndImagingStudy_WhenprocessedForInstance_ThenDicomPropertiesAreCorrectlyMappedtoInstanceWithinImagingStudyAsync()
{
DicomDataset dataset = FhirTransactionContextBuilder.CreateDicomDataset();
ImagingStudy imagingStudy = FhirResourceBuilder.CreateNewImagingStudy(StudyInstanceUid, new List <string>()
{
SeriesInstanceUid
}, new List <string>()
{
SopInstanceUid
}, PatientResourceId);
FhirTransactionContext context = FhirTransactionContextBuilder.DefaultFhirTransactionContext(dataset);
if (imagingStudy.Series.Count() > 0)
{
System.Console.WriteLine("");
}
ImagingStudy.SeriesComponent series = imagingStudy.Series.First();
ImagingStudy.InstanceComponent instance = series.Instance.First();
await _imagingStudyInstancePropertySynchronizer.SynchronizeAsync(context, instance, DefaultCancellationToken);
Assert.Equal(SopClassUid, instance.SopClass.Code);
Assert.Equal(1, instance.Number);
}
public void GivenATransactionContexAndImagingStudyWithNewModality_WhenProcessedForStudy_ThenNewModalityIsAdded()
{
ImagingStudy imagingStudy = FhirResourceBuilder.CreateNewImagingStudy(DefaultStudyInstanceUid, new List <string>()
{
DefaultSeriesInstanceUid
}, new List <string>()
{
DefaultSopInstanceUid
}, DefaultPatientResourceId);
FhirTransactionContext context = FhirTransactionContextBuilder.DefaultFhirTransactionContext(FhirTransactionContextBuilder.CreateDicomDataset());
_imagingStudyPropertySynchronizer.Synchronize(context, imagingStudy);
Assert.Collection(
imagingStudy.Modality,
modality => string.Equals(modality.Code, "MODALITY", StringComparison.Ordinal));
FhirTransactionContext newConText = FhirTransactionContextBuilder.DefaultFhirTransactionContext(FhirTransactionContextBuilder.CreateDicomDataset(modalityInStudy: "NEWMODALITY", modalityInSeries: "NEWMODALITY"));
_imagingStudyPropertySynchronizer.Synchronize(newConText, imagingStudy);
Assert.Collection(
imagingStudy.Modality,
modality => string.Equals(modality.Code, "MODALITY", StringComparison.Ordinal),
modality => string.Equals(modality.Code, "NEWMODALITY", StringComparison.Ordinal));
}
public void GivenATransactionContextWithUpdatedInstanceNumber_WhenprocessedForInstance_ThenDicomPropertyValuesAreUpdatedCorrectly()
{
DicomDataset dataset = FhirTransactionContextBuilder.CreateDicomDataset();
ImagingStudy imagingStudy = FhirResourceBuilder.CreateNewImagingStudy(studyInstanceUid, new List <string>()
{
seriesInstanceUid
}, new List <string>()
{
sopInstanceUid
}, patientResourceId);
FhirTransactionContext context = FhirTransactionContextBuilder.DefaultFhirTransactionContext(dataset);
ImagingStudy.SeriesComponent series = imagingStudy.Series.First();
ImagingStudy.InstanceComponent instance = series.Instance.First();
_imagingStudyInstancePropertySynchronizer.Synchronize(context, instance);
Assert.Equal(1, instance.Number);
FhirTransactionContext newContext = FhirTransactionContextBuilder.DefaultFhirTransactionContext(FhirTransactionContextBuilder.CreateDicomDataset(instanceNumber: "2"));
_imagingStudyInstancePropertySynchronizer.Synchronize(newContext, instance);
Assert.Equal(2, instance.Number);
}
public async Task GivenATransactionContextWithNoDicomPropertyValueChange_WhenprocessedForInstancee_ThenDicomPropertyValuesUpdateIsSkippedAsync()
{
DicomDataset dataset = FhirTransactionContextBuilder.CreateDicomDataset();
ImagingStudy imagingStudy = FhirResourceBuilder.CreateNewImagingStudy(StudyInstanceUid, new List <string>()
{
SeriesInstanceUid
}, new List <string>()
{
SopInstanceUid
}, PatientResourceId);
FhirTransactionContext context = FhirTransactionContextBuilder.DefaultFhirTransactionContext(dataset);
ImagingStudy.SeriesComponent series = imagingStudy.Series.First();
ImagingStudy.InstanceComponent instance = series.Instance.First();
await _imagingStudyInstancePropertySynchronizer.SynchronizeAsync(context, instance, DefaultCancellationToken);
Assert.Equal(1, instance.Number);
FhirTransactionContext newContext = FhirTransactionContextBuilder.DefaultFhirTransactionContext(dataset);
await _imagingStudyInstancePropertySynchronizer.SynchronizeAsync(newContext, instance, DefaultCancellationToken);
Assert.Equal(1, instance.Number);
}
public void GivenATransactionContexAndImagingStudyWithNewStudyDescription_WhenProcessedForStudy_ThenNewNoteIsAdded()
{
ImagingStudy imagingStudy = FhirResourceBuilder.CreateNewImagingStudy(DefaultStudyInstanceUid, new List <string>()
{
DefaultSeriesInstanceUid
}, new List <string>()
{
DefaultSopInstanceUid
}, DefaultPatientResourceId);
FhirTransactionContext context = FhirTransactionContextBuilder.DefaultFhirTransactionContext(FhirTransactionContextBuilder.CreateDicomDataset());
_imagingStudyPropertySynchronizer.Synchronize(context, imagingStudy);
Assert.Collection(
imagingStudy.Note,
note => string.Equals(note.Text.ToString(), "Study Description", StringComparison.Ordinal));
// When studyDescription is same, note is not added twice
_imagingStudyPropertySynchronizer.Synchronize(context, imagingStudy);
Assert.Collection(
imagingStudy.Note,
note => string.Equals(note.Text.ToString(), "Study Description", StringComparison.Ordinal));
// When study description is new, new note is added
FhirTransactionContext newConText = FhirTransactionContextBuilder.DefaultFhirTransactionContext(FhirTransactionContextBuilder.CreateDicomDataset(studyDescription: "New Study Description"));
_imagingStudyPropertySynchronizer.Synchronize(newConText, imagingStudy);
Assert.Collection(
imagingStudy.Note,
note => string.Equals(note.Text.ToString(), "Study Description", StringComparison.Ordinal),
note => string.Equals(note.Text.ToString(), "New Study Description", StringComparison.Ordinal));
}
public void GivenATransactionContextAndImagingStudyWithNewEndpointReference_WhenProcessedForStudyWithEndpoint_ThenEndpointIsAdded()
{
ImagingStudy imagingStudy = FhirResourceBuilder.CreateNewImagingStudy(DefaultStudyInstanceUid, new List <string>()
{
DefaultSeriesInstanceUid
}, new List <string>()
{
DefaultSopInstanceUid
}, DefaultPatientResourceId);
// Simulate the imaging study with an existing endpoint.
Endpoint existingEndpoint = FhirResourceBuilder.CreateEndpointResource(id: "2345", name: "new wado-rs");
var existingEndpointResourceId = new ServerResourceId(ResourceType.Endpoint, existingEndpoint.Id);
var existingEndpointReference = existingEndpointResourceId.ToResourceReference();
imagingStudy.Endpoint.Add(existingEndpointReference);
Endpoint endpoint = FhirResourceBuilder.CreateEndpointResource();
var endpointResourceId = new ServerResourceId(ResourceType.Endpoint, endpoint.Id);
var endpointReference = endpointResourceId.ToResourceReference();
FhirTransactionContext context = FhirTransactionContextBuilder.DefaultFhirTransactionContext(FhirTransactionContextBuilder.CreateDicomDataset());
context.Request.Endpoint = FhirTransactionRequestEntryGenerator.GenerateDefaultNoChangeRequestEntry <Endpoint>(endpointResourceId);
_imagingStudyPropertySynchronizer.Synchronize(context, imagingStudy);
Assert.Collection(
imagingStudy.Endpoint,
endPoint => Assert.Equal(existingEndpointReference, endPoint),
endPoint => Assert.Equal(endpointReference, endPoint));
}
public void GivenATransactionContextAndImagingStudyWithExitsingAccessionNumber_WhenProcessedForStudy_ThenAccessionNumberIsNotAdded()
{
ImagingStudy imagingStudy = FhirResourceBuilder.CreateNewImagingStudy(DefaultStudyInstanceUid, new List <string>()
{
DefaultSeriesInstanceUid
}, new List <string>()
{
DefaultSopInstanceUid
}, DefaultPatientResourceId);
FhirTransactionContext context = FhirTransactionContextBuilder.DefaultFhirTransactionContext(FhirTransactionContextBuilder.CreateDicomDataset());
_imagingStudyPropertySynchronizer.Synchronize(context, imagingStudy);
Assert.Collection(
imagingStudy.Identifier,
identifier => ValidationUtility.ValidateIdentifier("urn:dicom:uid", $"urn:oid:{DefaultStudyInstanceUid}", identifier),
identifier => ValidationUtility.ValidateAccessionNumber(null, FhirTransactionContextBuilder.DefaultAccessionNumber, identifier));
_imagingStudyPropertySynchronizer.Synchronize(context, imagingStudy);
Assert.Collection(
imagingStudy.Identifier,
identifier => ValidationUtility.ValidateIdentifier("urn:dicom:uid", $"urn:oid:{DefaultStudyInstanceUid}", identifier),
identifier => ValidationUtility.ValidateAccessionNumber(null, FhirTransactionContextBuilder.DefaultAccessionNumber, identifier));
}
public void GivenAChangeFeedEntryWithInvalidUtcTimeOffset_WhenDateTimeOffsetIsCalculated_ThenInvalidDicomTagValueExceptionIsThrown()
{
FhirTransactionContext fhirTransactionContext = FhirTransactionContextBuilder.DefaultFhirTransactionContext();
fhirTransactionContext.ChangeFeedEntry.Metadata.Add(DicomTag.TimezoneOffsetFromUTC, "0");
Assert.Throws <InvalidDicomTagValueException>(
() => ImagingStudyPipelineHelper.SetDateTimeOffSet(fhirTransactionContext));
}
public void GivenAChangeFeedEntry_WhenDateTimeOffsetIsCalculated_ThenDateTimeOffsetIsSet(int hour, int minute, string dicomValue)
{
FhirTransactionContext fhirTransactionContext = FhirTransactionContextBuilder.DefaultFhirTransactionContext();
DateTimeOffset utcTimeZoneOffset = new DateTimeOffset(2020, 1, 1, 0, 0, 0, new TimeSpan(hour, minute, 0));
fhirTransactionContext.ChangeFeedEntry.Metadata.Add(DicomTag.TimezoneOffsetFromUTC, dicomValue);
ImagingStudyPipelineHelper.SetDateTimeOffSet(fhirTransactionContext);
Assert.Equal(utcTimeZoneOffset.Offset, fhirTransactionContext.UtcDateTimeOffset);
}
public void GivenAChangeFeedEntry_WhenDateTimeOffsetIsCalculated_ThenDateTimeOffsetIsSet()
{
FhirTransactionContext fhirTransactionContext = FhirTransactionContextBuilder.DefaultFhirTransactionContext();
DateTimeOffset utcTimeZoneOffset = DateTimeOffset.Now;
fhirTransactionContext.ChangeFeedEntry.Metadata.Add(DicomTag.TimezoneOffsetFromUTC, utcTimeZoneOffset.ToString(FhirTransactionConstants.UtcTimezoneOffsetFormat));
ImagingStudyPipelineHelper.SetDateTimeOffSet(fhirTransactionContext);
Assert.Equal(utcTimeZoneOffset.Offset, fhirTransactionContext.UtcDateTimeOffset);
}
public async Task SyncPropertiesAsync_PartialValidationEnabledAndPropertyRequired_ThrowsError()
{
ImagingStudy imagingStudy = FhirResourceBuilder.CreateNewImagingStudy(DefaultStudyInstanceUid, new List <string>()
{
DefaultSeriesInstanceUid
}, new List <string>()
{
DefaultSopInstanceUid
}, DefaultPatientResourceId);
FhirTransactionContext context = FhirTransactionContextBuilder.DefaultFhirTransactionContext(FhirTransactionContextBuilder.CreateDicomDataset());
Action <ImagingStudy, FhirTransactionContext> actionSubstitute = Substitute.For <Action <ImagingStudy, FhirTransactionContext> >();
actionSubstitute.When(x => x.Invoke(imagingStudy, context)).Do(x => throw new InvalidDicomTagValueException("invalid tag", "invalid tag"));
await Assert.ThrowsAsync <InvalidDicomTagValueException>(() => ImagingStudyPipelineHelper.SynchronizePropertiesAsync(imagingStudy, context, actionSubstitute, true, true, _exceptionStore));
}
public void GivenATransactionContextAndImagingStudyWithNoEndpoint_WhenProcessedForStudy_ThenNewEndpointIsAdded()
{
ImagingStudy imagingStudy = FhirResourceBuilder.CreateNewImagingStudy(DefaultStudyInstanceUid, new List <string>()
{
DefaultSeriesInstanceUid
}, new List <string>()
{
DefaultSopInstanceUid
}, DefaultPatientResourceId);
FhirTransactionContext context = FhirTransactionContextBuilder.DefaultFhirTransactionContext(FhirTransactionContextBuilder.CreateDicomDataset());
_imagingStudyPropertySynchronizer.Synchronize(context, imagingStudy);
Assert.Collection(
imagingStudy.Endpoint,
endPoint => Assert.Equal(context.Request.Endpoint.ResourceId.ToResourceReference(), endPoint));
}
public async Task GivenATransactionContexAndImagingStudy_WhenprocessedForSeries_ThenDicomPropertiesAreCorrectlyMappedtoSeriesWithinImagingStudyAsync()
{
ImagingStudy imagingStudy = FhirResourceBuilder.CreateNewImagingStudy(StudyInstanceUid, new List <string>()
{
SeriesInstanceUid
}, new List <string>()
{
SopInstanceUid
}, PatientResourceId);
FhirTransactionContext context = FhirTransactionContextBuilder.DefaultFhirTransactionContext(FhirTransactionContextBuilder.CreateDicomDataset());
ImagingStudy.SeriesComponent series = imagingStudy.Series.First();
await _imagingStudySeriesPropertySynchronizer.SynchronizeAsync(context, series, DefaultCancellationToken);
Assert.Equal("Series Description", series.Description);
Assert.Equal("MODALITY", series.Modality.Code);
Assert.Equal(1, series.Number);
Assert.Equal(new FhirDateTime(1974, 8, 10, 8, 10, 24, TimeSpan.Zero), series.StartedElement);
}
public void GivenATransactionContexAndImagingStudy_WhenprocessedForInstance_ThenDicomPropertiesAreCorrectlyMappedtoInstanceWithinImagingStudy()
{
DicomDataset dataset = FhirTransactionContextBuilder.CreateDicomDataset();
ImagingStudy imagingStudy = FhirResourceBuilder.CreateNewImagingStudy(studyInstanceUid, new List <string>()
{
seriesInstanceUid
}, new List <string>()
{
sopInstanceUid
}, patientResourceId);
FhirTransactionContext context = FhirTransactionContextBuilder.DefaultFhirTransactionContext(dataset);
ImagingStudy.SeriesComponent series = imagingStudy.Series.First();
ImagingStudy.InstanceComponent instance = series.Instance.First();
_imagingStudyInstancePropertySynchronizer.Synchronize(context, instance);
Assert.Equal(sopClassUid, instance.SopClass.Code);
Assert.Equal(1, instance.Number);
}
public void GivenATransactionContextWithUpdatedSeriesModality_WhenprocessedForSeries_ThenDicomPropertyValuesAreUpdatedAreCorrectly()
{
ImagingStudy imagingStudy = FhirResourceBuilder.CreateNewImagingStudy(studyInstanceUid, new List <string>()
{
seriesInstanceUid
}, new List <string>()
{
sopInstanceUid
}, patientResourceId);
FhirTransactionContext context = FhirTransactionContextBuilder.DefaultFhirTransactionContext(FhirTransactionContextBuilder.CreateDicomDataset());
ImagingStudy.SeriesComponent series = imagingStudy.Series.First();
_imagingStudySeriesPropertySynchronizer.Synchronize(context, series);
Assert.Equal("MODALITY", series.Modality.Code);
FhirTransactionContext newContext = FhirTransactionContextBuilder.DefaultFhirTransactionContext(FhirTransactionContextBuilder.CreateDicomDataset(modalityInSeries: "NEWMODALITY"));
_imagingStudySeriesPropertySynchronizer.Synchronize(newContext, series);
Assert.Equal("NEWMODALITY", series.Modality.Code);
}
public void GivenATransactionContextWithNoPropertyValueChange_WhenprocessedForSeries_ThenDicomPropertyValuesUpdateIsSkipped()
{
ImagingStudy imagingStudy = FhirResourceBuilder.CreateNewImagingStudy(studyInstanceUid, new List <string>()
{
seriesInstanceUid
}, new List <string>()
{
sopInstanceUid
}, patientResourceId);
FhirTransactionContext context = FhirTransactionContextBuilder.DefaultFhirTransactionContext();
ImagingStudy.SeriesComponent series = imagingStudy.Series.First();
_imagingStudySeriesPropertySynchronizer.Synchronize(context, series);
Assert.Equal(1, series.Number);
FhirTransactionContext newContext = FhirTransactionContextBuilder.DefaultFhirTransactionContext();
_imagingStudySeriesPropertySynchronizer.Synchronize(newContext, series);
Assert.Equal(1, series.Number);
}
public async Task GivenATransactionContextWithUpdatedSeriesDescription_WhenprocessedForSeries_ThenDicomPropertyValuesAreUpdatedAreCorrectlyAsync()
{
ImagingStudy imagingStudy = FhirResourceBuilder.CreateNewImagingStudy(StudyInstanceUid, new List <string>()
{
SeriesInstanceUid
}, new List <string>()
{
SopInstanceUid
}, PatientResourceId);
FhirTransactionContext context = FhirTransactionContextBuilder.DefaultFhirTransactionContext(FhirTransactionContextBuilder.CreateDicomDataset());
ImagingStudy.SeriesComponent series = imagingStudy.Series.First();
await _imagingStudySeriesPropertySynchronizer.SynchronizeAsync(context, series, DefaultCancellationToken);
Assert.Equal("Series Description", series.Description);
FhirTransactionContext newContext = FhirTransactionContextBuilder.DefaultFhirTransactionContext(FhirTransactionContextBuilder.CreateDicomDataset(seriesDescrition: "New Series Description"));
await _imagingStudySeriesPropertySynchronizer.SynchronizeAsync(newContext, series, DefaultCancellationToken);
Assert.Equal("New Series Description", series.Description);
}
public async Task GivenATransactionContextAndImagingStudyWithExitsingModality_WhenProcessedForStudy_ThenModalityIsNotAddedAsync()
{
ImagingStudy imagingStudy = FhirResourceBuilder.CreateNewImagingStudy(DefaultStudyInstanceUid, new List <string>()
{
DefaultSeriesInstanceUid
}, new List <string>()
{
DefaultSopInstanceUid
}, DefaultPatientResourceId);
FhirTransactionContext context = FhirTransactionContextBuilder.DefaultFhirTransactionContext(FhirTransactionContextBuilder.CreateDicomDataset());
await _imagingStudyPropertySynchronizer.SynchronizeAsync(context, imagingStudy);
Assert.Collection(
imagingStudy.Modality,
modality => string.Equals(modality.Code, "MODALITY", StringComparison.Ordinal));
await _imagingStudyPropertySynchronizer.SynchronizeAsync(context, imagingStudy);
Assert.Collection(
imagingStudy.Modality,
modality => string.Equals(modality.Code, "MODALITY", StringComparison.Ordinal));
}
