private void PlaceBU_MS2Scan(IMsScan scan, List <IsoEnvelop> isoEnvelops)
{
Console.WriteLine("\n{0:HH:mm:ss,fff} Deconvolute Dynamic BoxCar Start", DateTime.Now);
int placeScanCount = 0;
foreach (var iso in isoEnvelops.OrderByDescending(p => p.TotalIntensity))
{
if (placeScanCount >= Parameters.MS1IonSelecting.TopN)
{
break;
}
if (DynamicExclusionList.isNotInExclusionList(iso.ExperimentIsoEnvelop.First().Mz, Parameters.MS1IonSelecting.ExclusionTolerance))
{
var dataTime = DateTime.Now;
lock (lockerExclude)
{
DynamicExclusionList.exclusionList.Enqueue(new Tuple <double, int, DateTime>(iso.ExperimentIsoEnvelop.First().Mz, iso.Charge, dataTime));
Console.WriteLine("2 ExclusionList Enqueue: {0}", iso.ExperimentIsoEnvelop.First().Mz);
}
DataDependentScan.PlaceMS2Scan(m_scans, Parameters, iso.ExperimentIsoEnvelop.First().Mz);
placeScanCount++;
}
}
}
internal DataReceiver(Parameters parameters)
{
Parameters = parameters;
DynamicExclusionList = new DynamicExclusionList();
switch (Parameters.GeneralSetting.MethodType)
{
case MethodTypes.ShotGun:
AddScanIntoQueueAction = AddScanIntoQueue_ShotGun;
Console.WriteLine("AddScanIntoQueueAction = ShotGun.");
break;
case MethodTypes.StaticBoxCar:
AddScanIntoQueueAction = AddScanIntoQueue_StaticBox;
Console.WriteLine("AddScanIntoQueueAction = StaticBox.");
break;
case MethodTypes.DynamicBoxCar_BU:
Boxes = new List <List <Tuple <double, double, double> > >();
AddScanIntoQueueAction = AddScanIntoQueue_BynamicBoxCar_BU;
Console.WriteLine("AddScanIntoQueueAction = DynamicBoxCar_BU.");
break;
case MethodTypes.DynamicBoxCar_TD:
DynamicDBCExclusionList = new DynamicDBCExclusionList();
AddScanIntoQueueAction = AddScanIntoQueue_DynamicBoxCar_TD;
Console.WriteLine("AddScanIntoQueueAction = DynamicBoxCar_TD.");
break;
case MethodTypes.UserDefined:
AddScanIntoQueueAction = AddScanIntoQueue_UserDefined;
Console.WriteLine("AddScanIntoQueueAction = UserDefined.");
break;
default:
break;
}
}
private void PlaceDynamicBoxCarMS2Scan(IMsScan scan, List <ChargeEnvelop> chargeEnvelops, List <IsoEnvelop> isoEnvelops)
{
Console.WriteLine("\n{0:HH:mm:ss,fff} Deconvolute Dynamic BoxCar Start", DateTime.Now);
int placeScanCount = 0;
foreach (var ce in chargeEnvelops)
{
if (placeScanCount >= Parameters.MS1IonSelecting.TopN)
{
return;
}
var mzs = ce.distributions.Select(p => p.mz).OrderBy(p => p).ToArray();
int matchedCount = DynamicDBCExclusionList.MatchExclusionList(mzs, 0.1);
if (matchedCount == 0)
{
Console.WriteLine("DynamicDBCExclusionList didn't match.");
if (Parameters.BoxCarScanSetting.DoDbcForMS2)
{
DataDependentScan.PlaceMS2Scan(m_scans, Parameters, ce.mzs_box);
}
else
{
var mz = ce.distributions_withIso.OrderByDescending(p => p.intensity).First().isoEnvelop.ExperimentIsoEnvelop.First().Mz;
if (DynamicExclusionList.isNotInExclusionList(mz, Parameters.MS1IonSelecting.ExclusionTolerance))
{
DataDependentScan.PlaceMS2Scan(m_scans, Parameters, mz);
}
}
placeScanCount++;
lock (lockerExclude)
{
DynamicDBCExclusionList.DBCExclusionList.Enqueue(new DynamicDBCValue(mzs, 0, DateTime.Now));
foreach (var x in ce.distributions_withIso)
{
var mz = x.isoEnvelop.ExperimentIsoEnvelop.First().Mz;
if (DynamicExclusionList.isNotInExclusionList(mz, Parameters.MS1IonSelecting.ExclusionTolerance))
{
DynamicExclusionList.exclusionList.Enqueue(new Tuple <double, int, DateTime>(mz, x.charge, DateTime.Now));
Console.WriteLine("1 ExclusionList Enqueue: {0}", mz);
}
}
}
}
else
{
Console.WriteLine("DynamicDBCExclusionList did match.");
}
}
if (placeScanCount >= Parameters.MS1IonSelecting.TopN)
{
return;
}
foreach (var iso in isoEnvelops)
{
if (placeScanCount >= Parameters.MS1IonSelecting.TopN)
{
return;
}
if (DynamicExclusionList.isNotInExclusionList(iso.ExperimentIsoEnvelop.First().Mz, Parameters.MS1IonSelecting.ExclusionTolerance))
{
var dataTime = DateTime.Now;
lock (lockerExclude)
{
DynamicExclusionList.exclusionList.Enqueue(new Tuple <double, int, DateTime>(iso.ExperimentIsoEnvelop.First().Mz, iso.Charge, dataTime));
Console.WriteLine("2 ExclusionList Enqueue: {0}", iso.ExperimentIsoEnvelop.First().Mz);
}
DataDependentScan.PlaceMS2Scan(m_scans, Parameters, iso.ExperimentIsoEnvelop.First().Mz);
placeScanCount++;
}
}
}