private void StartButton_Click(object sender, EventArgs e)
{
var filesToProcess = new List <string>();
var commandLine = new StringBuilder();
//Get files or filelist text
if (FileListRadio.Checked)
{
if (FileListBox.Items.Count == 0)
{
MessageBox.Show("No files to process");
return;
}
filesToProcess.AddRange(from string item in FileListBox.Items select item);
}
else if (String.IsNullOrEmpty(FileBox.Text) || !File.Exists(FileBox.Text))
{
MessageBox.Show("No files to process");
return;
}
else
{
filesToProcess.Add(String.Format("--filelist|\"{0}\"", FileBox.Text));
}
//Get config settings
if (UseCFGButton.Checked &&
(String.IsNullOrEmpty(ConfigBox.Text) || !File.Exists(ConfigBox.Text)))
{
commandLine.AppendFormat("--config|\"{0}\"|", ConfigBox.Text);
}
if (OutputFormatBox.Text != OutputExtensionBox.Text)
{
commandLine.AppendFormat("--ext|{0}|", OutputExtensionBox.Text);
}
switch (OutputFormatBox.Text)
{
case "mzXML":
commandLine.Append("--mzXML|");
break;
case "mz5":
commandLine.Append("--mz5|");
break;
case "mgf":
commandLine.Append("--mgf|");
break;
case "text":
commandLine.Append("--text|");
break;
case "ms2":
commandLine.Append("--ms2|");
break;
case "cms2":
commandLine.Append("--cms2|");
break;
}
if (Precision32.Checked)
{
commandLine.Append("--32|");
}
if (!WriteIndexBox.Checked)
{
commandLine.Append("--noindex|");
}
if (UseZlibBox.Checked)
{
commandLine.Append("--zlib|");
}
if (GzipBox.Checked)
{
commandLine.Append("--gzip|");
}
var msLevelsTotal = String.Empty;
var peakPickingTotal = String.Empty;
var scanNumberTotal = String.Empty;
var preferVendor = true;
foreach (DataGridViewRow row in FilterDGV.Rows)
{
switch ((string)row.Cells[0].Value)
{
case "msLevel":
msLevelsTotal += (string)row.Cells[1].Value + " ";
break;
case "peakPicking":
var splitLine = ((string)row.Cells[1].Value ?? "true").Split();
preferVendor = bool.Parse(splitLine[0]);
if (splitLine.Length > 1)
{
peakPickingTotal += splitLine[1] + " ";
}
break;
case "scanNumber":
scanNumberTotal += (string)row.Cells[1].Value + " ";
break;
default:
commandLine.AppendFormat("--filter|{0} {1}|", row.Cells[0].Value, row.Cells[1].Value);
break;
}
}
string outputFolder = String.IsNullOrEmpty(OutputBox.Text) ? Application.StartupPath
: OutputBox.Text;
if (!Directory.Exists(outputFolder))
{
if (MessageBox.Show("The directory \"" + outputFolder + "\" does not exist. Do you want to create it?",
"Create Directory?",
MessageBoxButtons.YesNo,
MessageBoxIcon.Question, MessageBoxDefaultButton.Button1) == DialogResult.No)
{
return;
}
Directory.CreateDirectory(outputFolder);
}
if (!String.IsNullOrEmpty(msLevelsTotal))
{
commandLine.AppendFormat("--filter|msLevel {0}|", msLevelsTotal.Trim());
}
if (!String.IsNullOrEmpty(peakPickingTotal))
{
commandLine.AppendFormat("--filter|peakPicking {0} {1}|", preferVendor.ToString().ToLower(),
peakPickingTotal.Trim());
}
if (!String.IsNullOrEmpty(scanNumberTotal))
{
commandLine.AppendFormat("--filter|scanNumber {0}|", scanNumberTotal.Trim());
}
var pf = new ProgressForm(filesToProcess, outputFolder, commandLine.ToString());
pf.Text = "Conversion Progress";
pf.ShowDialog();
}
private void StartButton_Click(object sender, EventArgs e)
{
var filesToProcess = new List<string>();
var commandLine = ConstructCommandline();
//Get files or filelist text
if (FileListRadio.Checked)
{
if (FileListBox.Items.Count == 0)
{
MessageBox.Show("No files to process");
return;
}
filesToProcess.AddRange(from string item in FileListBox.Items select item);
}
else if (String.IsNullOrEmpty(FileBox.Text) || !File.Exists(FileBox.Text))
{
MessageBox.Show("No files to process");
return;
}
else
{
filesToProcess.Add(String.Format("--filelist|\"{0}\"", FileBox.Text));
}
string outputFolder = String.IsNullOrEmpty(OutputBox.Text) ? Application.StartupPath
: OutputBox.Text;
if (!Directory.Exists(outputFolder))
{
if (MessageBox.Show("The directory \"" + outputFolder + "\" does not exist. Do you want to create it?",
"Create Directory?",
MessageBoxButtons.YesNo,
MessageBoxIcon.Question, MessageBoxDefaultButton.Button1) == DialogResult.No)
return;
Directory.CreateDirectory(outputFolder);
}
var pf = new ProgressForm(filesToProcess, outputFolder, commandLine);
pf.Text = "Conversion Progress";
pf.ShowDialog();
}
public MainLogic(ProgressForm.JobInfo info)
{
_info = info;
_canceled = false;
}