public void TestParseResultSet()
{
string xmlContent = "<?xml version='1.0' encoding='utf-16'?>" +
"<BioWFML>" +
" <ExecutionResult>" +
" <Collection>" +
" <Item>" +
" <Property name='Similarity'>1</Property>" +
" <Property name='MatchPattern'>QUT.Bio.BioPatML.Patterns.Motif</Property>" +
" <Property name='Matches'>5</Property>" +
" <Property name='Impact'>0.9</Property>" +
" <Property name='SubMatchNumber'>0</Property>" +
" <Property name='Length'>5</Property>" +
" <Property name='Strand'>1</Property>" +
" <Property name='Start'>1321</Property>" +
" <Property name='End'>1325</Property>" +
" <Property name='CenterPosition'>1323</Property>" +
" </Item>" +
" <Item>" +
" <Property name='Similarity'>1</Property>" +
" <Property name='MatchPattern'>QUT.Bio.BioPatML.Patterns.Motif</Property>" +
" <Property name='Matches'>5</Property>" +
" <Property name='Impact'>0.9</Property>" +
" <Property name='SubMatchNumber'>0</Property>" +
" <Property name='Length'>5</Property>" +
" <Property name='Strand'>1</Property>" +
" <Property name='Start'>15038</Property>" +
" <Property name='End'>15042</Property>" +
" <Property name='CenterPosition'>15040</Property>" +
" </Item>" +
" </Collection>" +
" </ExecutionResult>" +
"</BioWFML>";
BioWFMLResultManager resultManager = new BioWFMLResultManager();
ResultCollections collection = resultManager.ReadBioWFML(xmlContent);
}
private void MenuItem1_Click(object sender, RoutedEventArgs e)
{
MenuItem menu = sender as MenuItem;
if (menu != null)
{
switch (menu.Header.ToString())
{
case "Run Workflow":
{
try
{
if (CheckHasWorkflow())
{
runnerPanel = new Panels.JobRunner();
runnerPanel.Show();
tridentService = new TridentEmulatorSvc.WorkflowServiceClient();
bw = new BackgroundWorker();
bw.DoWork += delegate(object s, DoWorkEventArgs args)
{
Dispatcher pbDispatcher = runnerPanel.StatusTxt.Dispatcher;
UpdateStatusBarProgressTextDelegate update = new UpdateStatusBarProgressTextDelegate(UpdateStatusBarProgressText);
Object[] arguments = args.Argument as Object[];
string xmlContent = arguments[0] as string;
bool done = false; // a flag to determine the state of the search process
Guid jobId = new Guid();
Guid workflowId = new Guid();
tridentService.SaveWorkFlowCompleted += delegate (object source, TridentEmulatorSvc.SaveWorkFlowCompletedEventArgs e2)
{
workflowId = e2.Result;
pbDispatcher.BeginInvoke(update, "Workflow Saved!");
done = true;
};
pbDispatcher.BeginInvoke(update, "Saving Workflow...");
tridentService.SaveWorkFlowAsync(xmlContent);
while (!done) { System.Threading.Thread.Sleep(1000); }
done = false;
tridentService.ExecuteWorkflowCompleted += delegate(object sender2, TridentEmulatorSvc.ExecuteWorkflowCompletedEventArgs e3)
{
jobId = e3.Result;
done = true;
};
pbDispatcher.BeginInvoke(update, "Queuing job " + workflowId + "");
tridentService.ExecuteWorkflowAsync("BioPlaygroundWF", workflowId);
bool isCheckingStatus = false;
string jobStatus = String.Empty;
while (!done) { System.Threading.Thread.Sleep(1000); }
done = false;
tridentService.GetJobStatusCompleted += delegate(object sender3, TridentEmulatorSvc.GetJobStatusCompletedEventArgs e4)
{
jobStatus = e4.Result;
pbDispatcher.BeginInvoke(update, jobStatus + "...");
System.Diagnostics.Debug.WriteLine("Job Status : > " + jobStatus);
if (jobStatus.ToLower().Equals("completed"))
{
done = true;
}
else if (jobStatus.ToLower().Equals("aborted"))
{
//this.ReportException(new Exception("Task run fail!"));
done = true;
}
isCheckingStatus = false;
};
while (!done)
{
System.Threading.Thread.Sleep(2000);
if (!isCheckingStatus)
{
if (done && jobStatus == "completed" )
{
pbDispatcher.BeginInvoke(update, "Job execution success!");
System.Threading.Thread.Sleep(2000);
break;
}
else
if
(done && jobStatus == "aborted")
{
pbDispatcher.BeginInvoke(update, "Job execution fail, please check your workflow or parameters.");
System.Threading.Thread.Sleep(2000);
break;
}
tridentService.GetJobStatusAsync("BioPlaygroundWF", jobId);
isCheckingStatus = true;
}
}
if (jobStatus == "completed")
{
pbDispatcher.BeginInvoke(update, "Scanning for data output.");
done = false;
}
System.Threading.Thread.Sleep(1500);
List<string> BioWFResultML = new List<string>();
BioWFResultML.Add(jobStatus);
tridentService.GetJobOuputCompleted += delegate(object sender4, TridentEmulatorSvc.GetJobOuputCompletedEventArgs e5)
{
if (e5.Result != null)
{
pbDispatcher.BeginInvoke(update, "downloading data output...");
BioWFResultML = e5.Result.ToList();
args.Result = BioWFResultML[0]; //for now...
}
else
{
pbDispatcher.BeginInvoke(update, "No data output...");
}
System.Threading.Thread.Sleep(2500);
done = true;
};
if (jobStatus.CompareTo("Completed") == 0)
{
done = false;
tridentService.GetJobOuputAsync("BioPlaygroundWF", jobId);
}
else
args.Result = BioWFResultML[0]; //try
while (!done) { System.Threading.Thread.Sleep(1000); }
};
Object[] parameters = new Object[1];
parameters[0] = wfManager.GetWorkflowXML();
try
{
bw.RunWorkerCompleted += delegate(object s, RunWorkerCompletedEventArgs args)
{
string resultString = args.Result as string;
if (resultString.CompareTo("Aborted") == 0)
ReportException(new Exception("Task Run Fail, please check your workflow or parameters."));
else
{
//Inform the parent about the task completion
runnerPanel.CloseMe();
BioWFMLResultManager resultComponent = new BioWFMLResultManager();
OnHasNewResults(new ResultSetEventArgs(resultComponent.ReadBioWFML(args.Result as string)));
}
};
//Run the bot
bw.RunWorkerAsync(parameters);
}
catch (Exception eee)
{
ReportException(eee);
runnerPanel.CloseMe();
}
}
else
{
MessageBox.Show("No workflow found!");
}
}
catch (Exception ex)
{
ReportException(ex);
runnerPanel.CloseMe();
}
break;
}
case "Save Workflow":
{
try
{
//MessageBox.Show("Ooops not supported yet, perhaps try running it directly?");
MessageBox.Show(wfManager.GetWorkflowXML());
}
catch (Exception ee)
{
ReportException(ee);
}
break;
}
}
}
}
