public static void InitializeMetadata(string speciesAgeMap, string siteAgeMap, string siteSpeciesMap, Dictionary <string, IEnumerable <ISpecies> > ageStatSpecies, List <string> siteAgeStats, List <string> siteSppStats)
{
ScenarioReplicationMetadata scenRep = new ScenarioReplicationMetadata()
{
RasterOutCellArea = PlugIn.ModelCore.CellArea,
TimeMin = PlugIn.ModelCore.StartTime,
TimeMax = PlugIn.ModelCore.EndTime,
};
Extension = new ExtensionMetadata(PlugIn.ModelCore)
//Extension = new ExtensionMetadata()
{
Name = PlugIn.ExtensionName,
TimeInterval = PlugIn.ModelCore.CurrentTime,
ScenarioReplicationMetadata = scenRep
};
//---------------------------------------
// map outputs:
//---------------------------------------
//OutputMetadata mapOut_BiomassRemoved = new OutputMetadata()
//{
// Type = OutputType.Map,
// Name = "biomass removed",
// FilePath = @HarvestMapName,
// Map_DataType = MapDataType.Continuous,
// Map_Unit = FieldUnits.Mg_ha,
// Visualize = true,
//};
//Extension.OutputMetadatas.Add(mapOut_BiomassRemoved);
foreach (KeyValuePair <string, IEnumerable <ISpecies> > sppAgeStatIter in ageStatSpecies)
{
CohortUtils.SpeciesCohortStatDelegate species_stat_func;
switch (sppAgeStatIter.Key)
{
case "MAX":
species_stat_func = new CohortUtils.SpeciesCohortStatDelegate(CohortUtils.GetMaxAge);
break;
case "MIN":
species_stat_func = new CohortUtils.SpeciesCohortStatDelegate(CohortUtils.GetMinAge);
break;
case "MED":
species_stat_func = new CohortUtils.SpeciesCohortStatDelegate(CohortUtils.GetMedianAge);
break;
case "AVG":
species_stat_func = new CohortUtils.SpeciesCohortStatDelegate(CohortUtils.GetAvgAge);
break;
case "SD":
species_stat_func = new CohortUtils.SpeciesCohortStatDelegate(CohortUtils.GetStdDevAge);
break;
default:
//this shouldn't ever occur
System.Console.WriteLine("Unhandled statistic: {0}, using MaxAge Instead", sppAgeStatIter.Key);
species_stat_func = new CohortUtils.SpeciesCohortStatDelegate(CohortUtils.GetMaxAge);
break;
}
foreach (ISpecies species in sppAgeStatIter.Value)
{
OutputMetadata mapOut_age_stats = new OutputMetadata()
{
Type = OutputType.Map,
Name = species.Name + "_age_stats_map",
FilePath = SpeciesMapNames.ReplaceTemplateVars(speciesAgeMap, species.Name, sppAgeStatIter.Key, PlugIn.ModelCore.CurrentTime),
Map_DataType = MapDataType.Continuous,
Visualize = true,
//Map_Unit = "categorical",
};
Extension.OutputMetadatas.Add(mapOut_age_stats);
}
}
foreach (string ageStatIter in siteAgeStats)
{
CohortUtils.SiteCohortStatDelegate site_stat_func;
switch (ageStatIter)
{
case "MAX":
site_stat_func = new CohortUtils.SiteCohortStatDelegate(CohortUtils.GetMaxAge);
break;
case "MIN":
site_stat_func = new CohortUtils.SiteCohortStatDelegate(CohortUtils.GetMinAge);
break;
case "MED":
site_stat_func = new CohortUtils.SiteCohortStatDelegate(CohortUtils.GetMedianAge);
break;
case "AVG":
site_stat_func = new CohortUtils.SiteCohortStatDelegate(CohortUtils.GetAvgAge);
break;
case "SD":
site_stat_func = new CohortUtils.SiteCohortStatDelegate(CohortUtils.GetStdDevAge);
break;
case "COUNT":
site_stat_func = new CohortUtils.SiteCohortStatDelegate(CohortUtils.GetCohortCount);
break;
case "RICH":
site_stat_func = new CohortUtils.SiteCohortStatDelegate(CohortUtils.GetAgeRichness);
break;
case "EVEN":
site_stat_func = new CohortUtils.SiteCohortStatDelegate(CohortUtils.GetAgeEvenness);
break;
default:
System.Console.WriteLine("Unhandled statistic: {0}, using MaxAge Instead", ageStatIter);
site_stat_func = new CohortUtils.SiteCohortStatDelegate(CohortUtils.GetMaxAge);
break;
}
OutputMetadata mapOut_site_age_stats = new OutputMetadata()
{
Type = OutputType.Map,
Name = ageStatIter + "_age_stats_map",
FilePath = SiteMapNames.ReplaceTemplateVars(siteAgeMap, ageStatIter, PlugIn.ModelCore.CurrentTime),
Map_DataType = MapDataType.Continuous,
Visualize = true,
//Map_Unit = "categorical",
};
Extension.OutputMetadatas.Add(mapOut_site_age_stats);
}
foreach (string sppStatIter in siteSppStats)
{
CohortUtils.SiteCohortStatDelegate site_stat_func;
switch (sppStatIter)
{
case "RICH":
//FIXME
site_stat_func = new CohortUtils.SiteCohortStatDelegate(CohortUtils.GetSppRichness);
break;
//add in richness
default:
System.Console.WriteLine("Unhandled statistic: {0}, using Species Richness Instead", sppStatIter);
site_stat_func = new CohortUtils.SiteCohortStatDelegate(CohortUtils.GetSppRichness);
break;
}
OutputMetadata mapOut_site_species_stats = new OutputMetadata()
{
Type = OutputType.Map,
Name = sppStatIter + "_age_stats_map",
FilePath = SiteMapNames.ReplaceTemplateVars(siteSpeciesMap, sppStatIter, PlugIn.ModelCore.CurrentTime),
Map_DataType = MapDataType.Continuous,
Visualize = true,
//Map_Unit = "categorical",
};
Extension.OutputMetadatas.Add(mapOut_site_species_stats);
}
//---------------------------------------
MetadataProvider mp = new MetadataProvider(Extension);
mp.WriteMetadataToXMLFile("Metadata", Extension.Name, Extension.Name);
}
//---------------------------------------------------------------------
public override void Run()
{
//1) Create the output species age stats maps
foreach (KeyValuePair <string, IEnumerable <ISpecies> > sppAgeStatIter in ageStatSpecies)
{
//statIter.Key = statistic name
//set a function pointer here for the statistic, so we don't have to do the switch operation for every single pixel every single time??
CohortUtils.SpeciesCohortStatDelegate species_stat_func;
switch (sppAgeStatIter.Key)
{
case "MAX":
species_stat_func = new CohortUtils.SpeciesCohortStatDelegate(CohortUtils.GetMaxAge);
break;
case "MIN":
species_stat_func = new CohortUtils.SpeciesCohortStatDelegate(CohortUtils.GetMinAge);
break;
case "MED":
species_stat_func = new CohortUtils.SpeciesCohortStatDelegate(CohortUtils.GetMedianAge);
break;
case "AVG":
species_stat_func = new CohortUtils.SpeciesCohortStatDelegate(CohortUtils.GetAvgAge);
break;
case "SD":
species_stat_func = new CohortUtils.SpeciesCohortStatDelegate(CohortUtils.GetStdDevAge);
break;
default:
//this shouldn't ever occur
System.Console.WriteLine("Unhandled statistic: {0}, using MaxAge Instead", sppAgeStatIter.Key);
species_stat_func = new CohortUtils.SpeciesCohortStatDelegate(CohortUtils.GetMaxAge);
break;
}
foreach (ISpecies species in sppAgeStatIter.Value)
{
string path = SpeciesMapNames.ReplaceTemplateVars(sppagestats_mapNames, species.Name, sppAgeStatIter.Key, modelCore.CurrentTime);
ModelCore.UI.WriteLine(" Writing {0} map for {1} to {2} ...", sppAgeStatIter.Key, species.Name, path);
using (IOutputRaster <IntPixel> outputRaster = modelCore.CreateRaster <IntPixel>(path, modelCore.Landscape.Dimensions))
{
IntPixel pixel = outputRaster.BufferPixel;
foreach (Site site in modelCore.Landscape.AllSites)
{
if (!site.IsActive) // and has the spp we want
{
pixel.MapCode.Value = 0;
}
else
{
//need to do a switch on statistic
pixel.MapCode.Value = (int)species_stat_func(species, site);
}
outputRaster.WriteBufferPixel();
}
}
}
}
//2) Create the output site age stats maps
foreach (string ageStatIter in siteAgeStats)
{
CohortUtils.SiteCohortStatDelegate site_stat_func;
switch (ageStatIter)
{
case "MAX":
site_stat_func = new CohortUtils.SiteCohortStatDelegate(CohortUtils.GetMaxAge);
break;
case "MIN":
site_stat_func = new CohortUtils.SiteCohortStatDelegate(CohortUtils.GetMinAge);
break;
case "MED":
site_stat_func = new CohortUtils.SiteCohortStatDelegate(CohortUtils.GetMedianAge);
break;
case "AVG":
site_stat_func = new CohortUtils.SiteCohortStatDelegate(CohortUtils.GetAvgAge);
break;
case "SD":
site_stat_func = new CohortUtils.SiteCohortStatDelegate(CohortUtils.GetStdDevAge);
break;
case "COUNT":
site_stat_func = new CohortUtils.SiteCohortStatDelegate(CohortUtils.GetCohortCount);
break;
case "RICH":
site_stat_func = new CohortUtils.SiteCohortStatDelegate(CohortUtils.GetAgeRichness);
break;
case "EVEN":
site_stat_func = new CohortUtils.SiteCohortStatDelegate(CohortUtils.GetAgeEvenness);
break;
default:
System.Console.WriteLine("Unhandled statistic: {0}, using MaxAge Instead", ageStatIter);
site_stat_func = new CohortUtils.SiteCohortStatDelegate(CohortUtils.GetMaxAge);
break;
}
string path = SiteMapNames.ReplaceTemplateVars(siteagestats_mapNames, ageStatIter, modelCore.CurrentTime);
ModelCore.UI.WriteLine(" Writing {0} site map to {1} ...", ageStatIter, path);
using (IOutputRaster <IntPixel> outputRaster = modelCore.CreateRaster <IntPixel>(path, modelCore.Landscape.Dimensions))
{
IntPixel pixel = outputRaster.BufferPixel;
foreach (Site site in modelCore.Landscape.AllSites)
{
if (!site.IsActive)
{
pixel.MapCode.Value = 0;
}
else
{
pixel.MapCode.Value = (int)site_stat_func(site);
}
outputRaster.WriteBufferPixel();
}
}
}
//3) Create the output site species stats maps
foreach (string sppStatIter in siteSppStats)
{
CohortUtils.SiteCohortStatDelegate site_stat_func;
switch (sppStatIter)
{
case "RICH":
//FIXME
site_stat_func = new CohortUtils.SiteCohortStatDelegate(CohortUtils.GetSppRichness);
break;
//add in richness
default:
System.Console.WriteLine("Unhandled statistic: {0}, using Species Richness Instead", sppStatIter);
site_stat_func = new CohortUtils.SiteCohortStatDelegate(CohortUtils.GetSppRichness);
break;
}
string path = SiteMapNames.ReplaceTemplateVars(sitesppstats_mapNames, sppStatIter, modelCore.CurrentTime);
ModelCore.UI.WriteLine(" Writing {0} site map to {1} ...", sppStatIter, path);
using (IOutputRaster <IntPixel> outputRaster = modelCore.CreateRaster <IntPixel>(path, modelCore.Landscape.Dimensions))
{
IntPixel pixel = outputRaster.BufferPixel;
foreach (Site site in modelCore.Landscape.AllSites)
{
if (!site.IsActive)
{
pixel.MapCode.Value = 0;
}
else
{
pixel.MapCode.Value = (int)site_stat_func(site);
}
outputRaster.WriteBufferPixel();
}
}
}
}