public void TestReadingCorruptedRawFile()
{
var methodName = MethodBase.GetCurrentMethod().Name;
TestUtils.ShowStarting(methodName);
const string rawFilePath = @"\\proto-2\UnitTest_Files\InformedProteomics_TestFiles\Corrupted\YS_Shew_testHCD_CID.raw";
if (!File.Exists(rawFilePath))
{
Assert.Ignore(@"Skipping test {0} since file not found: {1}", methodName, rawFilePath);
}
var reader = new XCaliburReader(rawFilePath);
reader.ReadMassSpectrum(17957);
try
{
reader.ReadMassSpectrum(17957);
}
catch (System.Runtime.InteropServices.COMException e)
{
Console.WriteLine(e.Message);
}
Console.Write("Done");
}
public void TestXCaliburReader()
{
var methodName = MethodBase.GetCurrentMethod().Name;
TestUtils.ShowStarting(methodName);
var xcaliburReader = new XCaliburReader(TestTopDownRawFilePathCid);
var scans = new[] {423, 425};
foreach (var scan in scans)
{
var spec = xcaliburReader.ReadMassSpectrum(scan) as ProductSpectrum;
Assert.True(spec != null);
var isolationWindow = spec.IsolationWindow;
Console.WriteLine("MsLevel: {0}", spec.MsLevel);
Console.WriteLine("ActivationMethod: {0}", spec.ActivationMethod);
Console.WriteLine("Rt: {0}", spec.ElutionTime);
Console.WriteLine("IsolationWindowTargetMz: {0}", isolationWindow.IsolationWindowTargetMz);
Console.WriteLine("IsolationWindowLowerOffset: {0}", isolationWindow.IsolationWindowLowerOffset);
Console.WriteLine("IsolationWindowUpperOffset: {0}", isolationWindow.IsolationWindowUpperOffset);
Console.WriteLine("MonoisotopicMz: {0}", isolationWindow.MonoisotopicMz);
Console.WriteLine("PrecursorCharge: {0}", isolationWindow.Charge);
}
}
