public MosaicWindow()
{
this.imageView = new TileView();
tileViewThreadController = new ThreadController(this);
tileViewThreadController.SetThreadCompletedCallback(TileViewThreadCompleted);
tileViewThreadController.SetThreadProgressCallback(TileViewProgressIndicator);
this.TileView.SetThreadController(tileViewThreadController);
InitializeComponent();
this.imageView.BackColor = Color.Black;
this.imageView.HandleCreated += new EventHandler(OnTileViewerHandleCreated);
this.imageView.MouseMove += new MouseEventHandler(OnTileViewerMouseMove);
this.imageView.ZoomChanged += new EventHandler(OnTileViewerZoomChanged);
this.imageView.Dock = DockStyle.Fill;
this.viewPanel.Controls.Add(this.imageView);
this.imageView.Toolbox = this.tileViewEditToolBox;
this.tileOverView.SetMosaicWindow(this);
this.tileOverView.TileOverViewCompletedLoadHandler +=
new TileOverViewHandler <TileOverView,
TileOverViewEventArgs>(OnTileOverViewCompletedLoadHandler);
this.toolStripZoomComboBox.SelectedIndex = 3;
plugins = new List <MosaicPlugin>();
//plugins.Add(new ProfileTool("Profile", this));
plugins.Add(new RoiTool("Region", this));
plugins.Add(new LinearScaleTool("Linear Scale", this));
plugins.Add(new RGBBalanceTool("RGB Balance", this));
plugins.Add(new ScalebarTool("Scalebar", this));
MosaicPlugin.AllPlugins["Linear Scale"].Enabled = false;
MosaicPlugin.AllPlugins["RGB Balance"].Enabled = false;
MosaicPlugin.AllPlugins["Region"].Enabled = false;
//MosaicPlugin.AllPlugins["Profile"].Enabled = false;
}
public MosaicWindow()
{
this.imageView = new TileView();
tileViewThreadController = new ThreadController(this);
tileViewThreadController.SetThreadCompletedCallback(TileViewThreadCompleted);
tileViewThreadController.SetThreadProgressCallback(TileViewProgressIndicator);
this.TileView.SetThreadController(tileViewThreadController);
InitializeComponent();
this.imageView.BackColor = Color.Black;
this.imageView.HandleCreated += new EventHandler(OnTileViewerHandleCreated);
this.imageView.MouseMove += new MouseEventHandler(OnTileViewerMouseMove);
this.imageView.ZoomChanged += new EventHandler(OnTileViewerZoomChanged);
this.imageView.Dock = DockStyle.Fill;
this.viewPanel.Controls.Add(this.imageView);
this.imageView.Toolbox = this.tileViewEditToolBox;
this.tileOverView.SetMosaicWindow(this);
this.tileOverView.TileOverViewCompletedLoadHandler +=
new TileOverViewHandler<TileOverView,
TileOverViewEventArgs>(OnTileOverViewCompletedLoadHandler);
this.toolStripZoomComboBox.SelectedIndex = 3;
plugins = new List<MosaicPlugin>();
//plugins.Add(new ProfileTool("Profile", this));
plugins.Add(new RoiTool("Region", this));
plugins.Add(new LinearScaleTool("Linear Scale", this));
plugins.Add(new RGBBalanceTool("RGB Balance", this));
plugins.Add(new ScalebarTool("Scalebar", this));
MosaicPlugin.AllPlugins["Linear Scale"].Enabled = false;
MosaicPlugin.AllPlugins["RGB Balance"].Enabled = false;
MosaicPlugin.AllPlugins["Region"].Enabled = false;
//MosaicPlugin.AllPlugins["Profile"].Enabled = false;
}
public void UpdateGraphForLoadedImage()
{
TileView viewer = this.mosaicWindow.TileView;
// CalculateGreyLevelHistogramShape();
double min_in_images = Double.MaxValue, max_in_images = Double.MinValue;
double max_posible_intensity = 0.0;
if (MosaicWindow.MosaicInfo.IsColour)
{
return;
}
if (viewer.CacheImageAvailiable)
{
max_posible_intensity = viewer.CacheImage.MaximumPossibleIntensityValue;
viewer.CacheImage.FindMinMaxIntensity(out min_in_images, out max_in_images);
}
else
{
List <Tile> tiles = viewer.GetVisibleTiles();
if (tiles == null)
{
return;
}
foreach (Tile tile in tiles)
{
if (tile.IsDummy)
{
continue;
}
FreeImageAlgorithmsBitmap dib = tile.LoadFreeImageBitmap();
if (max_posible_intensity == 0.0)
{
max_posible_intensity = dib.MaximumPossibleIntensityValue;
}
double min;
double max;
dib.FindMinMaxIntensity(out min, out max);
if (min < min_in_images)
{
min_in_images = min;
}
if (max > max_in_images)
{
max_in_images = max;
}
dib.Dispose();
}
}
this.min = min_in_images;
this.max = max_in_images;
this.max_possible = max_posible_intensity;
this.minNumericUpDown.Minimum = Convert.ToDecimal(0);
this.maxNumericUpDown.Minimum = Convert.ToDecimal(1);
this.minNumericUpDown.Maximum = Convert.ToDecimal(this.max_possible - 1);
this.maxNumericUpDown.Maximum = Convert.ToDecimal(this.max_possible);
this.minNumericUpDown.Value = Convert.ToDecimal(this.min);
this.maxNumericUpDown.Value = Convert.ToDecimal(this.max);
this.zedGraphControl.GraphPane.XAxis.Scale.Min = 0;
this.zedGraphControl.GraphPane.XAxis.Scale.Max = this.max;
this.zedGraphControl.GraphPane.YAxis.Scale.Min = 0;
this.zedGraphControl.GraphPane.YAxis.Scale.Max = 255;
this.cursor1.Position = this.min;
this.cursor2.Position = this.max;
this.DisplayPlot();
this.zedGraphControl.AxisChange();
}
/*
* private void CaculateColourHistogramShape()
* {
* TileView viewer = this.mosaicWindow.TileView;
*
* List<Tile> tiles = this.mosaicWindow.MosaicInfo.Items;
*
* if (tiles == null)
* return;
*
* int[] total_red_hist = new int[256];
* int[] total_green_hist = new int[256];
* int[] total_blue_hist = new int[256];
* ulong[] total_hist = new ulong[256];
*
* int[] red_hist = null;
* int[] green_hist = null;
* int[] blue_hist = null;
* ulong[] hist = null;
* bool colourImage = false;
*
* if (mosaicWindow.MosaicInfo.ColorDepth >= 24)
* colourImage = true;
*
* for (int i = 0; i < total_red_hist.Length; i++)
* {
* total_red_hist[i] = 0;
* total_green_hist[i] = 0;
* total_blue_hist[i] = 0;
* }
*
* double max_posible_intensity_in_images = 0.0;
*
* foreach (Tile tile in tiles)
* {
*
* if (tile.IsDummy)
* continue;
*
* FreeImageAlgorithmsBitmap dib = tile.LoadFreeImageBitmap(tile.FilePath);
*
* if (dib.MaximumPossibleIntensityValue > max_posible_intensity_in_images)
* max_posible_intensity_in_images = dib.MaximumPossibleIntensityValue;
*
* if (colourImage)
* {
* dib.GetHistogram(FREE_IMAGE_COLOR_CHANNEL.FICC_RED, out red_hist);
* dib.GetHistogram(FREE_IMAGE_COLOR_CHANNEL.FICC_GREEN, out green_hist);
* dib.GetHistogram(FREE_IMAGE_COLOR_CHANNEL.FICC_BLUE, out blue_hist);
* }
* else
* {
* dib.GetGreyLevelHistogram(256, out hist);
* }
*
* dib.Dispose();
*
* for (int i = 0; i < total_red_hist.Length; i++)
* {
* if (colourImage)
* {
* total_red_hist[i] += red_hist[i];
* total_green_hist[i] += green_hist[i];
* total_blue_hist[i] += blue_hist[i];
* }
* else
* {
* total_hist[i] += hist[i];
* }
* }
* }
*
* double range_per_bin = max_posible_intensity_in_images / 256;
*
* double x, y;
* PointPairList red_list = new PointPairList();
* PointPairList green_list = new PointPairList();
* PointPairList blue_list = new PointPairList();
*
* if (colourImage)
* {
* for (int i = 0; i < total_red_hist.Length; i++)
* {
* x = (double)i;
* y = (double)total_red_hist[i];
* red_list.Add(x, y);
*
* y = (double)total_green_hist[i];
* green_list.Add(x, y);
*
* y = (double)total_blue_hist[i];
* blue_list.Add(x, y);
* }
*
* // Generate a red curve with diamond
* LineItem red_curve = myPane.AddCurve("",
* red_list, Color.Red, SymbolType.None);
*
* LineItem green_curve = myPane.AddCurve("",
* green_list, Color.Green, SymbolType.None);
*
* LineItem blue_curve = myPane.AddCurve("",
* blue_list, Color.Blue, SymbolType.None);
* }
* else
* {
* for (int i = 0; i < total_red_hist.Length; i++)
* {
* x = (double)(i * range_per_bin);
* y = (double)total_hist[i];
* red_list.Add(x, y);
* }
*
* // Generate a red curve with diamond
* // symbols, and "Porsche" in the legend
* BarItem curve = myPane.AddBar("",
* red_list, Color.Black);
* }
*
* zgc.AxisChange();
* }
*/
#endregion
private void CalculateGreyLevelHistogramShape()
{
if (MosaicWindow.MosaicInfo.ColorDepth >= 24)
{
return;
}
TileView viewer = this.mosaicWindow.TileView;
List <Tile> tiles = MosaicWindow.MosaicInfo.Items;
if (tiles == null)
{
return;
}
int[] hist = null;
int[] total_hist = new int[256];
if (viewer.CacheImageAvailiable)
{
viewer.CacheImage.GetHistogram(FREE_IMAGE_COLOR_CHANNEL.FICC_BLACK, out total_hist);
}
else
{
foreach (Tile tile in tiles)
{
tile.Thumbnail.GetHistogram(FREE_IMAGE_COLOR_CHANNEL.FICC_BLACK, out hist);
for (int i = 0; i < 256; i++)
{
total_hist[i] = hist[i];
}
}
}
int hist_peak_intensity = 0;
for (int i = 0; i < 256; i++)
{
if (total_hist[i] > hist_peak_intensity)
{
hist_peak_intensity = total_hist[i];
}
}
PointPairList hist_list = new PointPairList();
double x, y;
double max_intensity = MosaicWindow.MosaicInfo.TotalMaxIntensity;
for (int i = 0; i < 256; i++)
{
x = (double)(i * max_intensity / 256.0);
y = ((double)total_hist[i] / hist_peak_intensity * 256.0);
hist_list.Add(x, y);
}
if (this.histogramCurve != null)
{
this.zedGraphControl.GraphPane.CurveList.Remove(this.histogramCurve);
}
this.histogramCurve =
this.zedGraphControl.GraphPane.AddCurve("Histogram", hist_list, Color.Black, SymbolType.None);
this.histogramCurve.Line.Fill = new Fill(Color.White, Color.LightSkyBlue, -45F);
}
private void OnPanningOccurred(TileView sender, EventArgs args)
{
this.Refresh();
}
public void UpdateUIForLoadedImage()
{
TileView viewer = this.mosaicWindow.TileView;
/*
* CalculateGreyLevelHistogramShape(Tile.channel[0], hist_list1, Tile.TotalMaxIntensity[0]);
* if (this.histogramCurve1 != null)
* this.zedGraphControl1.GraphPane.CurveList.Remove(this.histogramCurve1);
* this.histogramCurve1 = this.zedGraphControl1.GraphPane.AddCurve("Histogram", hist_list1, Color.Black, SymbolType.None);
* this.histogramCurve1.Line.Fill = new Fill(Color.White, Color.LightSkyBlue, -45F);
*
* CalculateGreyLevelHistogramShape(Tile.channel[1], hist_list2, Tile.TotalMaxIntensity[1]);
* if (this.histogramCurve2 != null)
* this.zedGraphControl2.GraphPane.CurveList.Remove(this.histogramCurve2);
* this.histogramCurve2 = this.zedGraphControl2.GraphPane.AddCurve("Histogram", hist_list2, Color.Black, SymbolType.None);
* this.histogramCurve2.Line.Fill = new Fill(Color.White, Color.LightSkyBlue, -45F);
*
* CalculateGreyLevelHistogramShape(Tile.channel[2], hist_list3, Tile.TotalMaxIntensity[2]);
* if (this.histogramCurve3 != null)
* this.zedGraphControl3.GraphPane.CurveList.Remove(this.histogramCurve3);
* this.histogramCurve3 = this.zedGraphControl3.GraphPane.AddCurve("Histogram", hist_list3, Color.Black, SymbolType.None);
* this.histogramCurve3.Line.Fill = new Fill(Color.White, Color.LightSkyBlue, -45F);
*/
// double min_in_images = Double.MaxValue, max_in_images = Double.MinValue;
double max_posible_intensity = 0.0;
if (!MosaicWindow.MosaicInfo.IsColour)
{
return;
}
// load 1 image to get the max possible grey value for the channels
List <Tile> tiles = viewer.GetVisibleTiles();
if (tiles == null)
{
return;
}
FreeImageAlgorithmsBitmap dib = Tile.LoadFreeImageBitmapFromFile(tiles[0].FilePath); // get on e image from one of the channels
// max_posible_intensity = dib.MaximumPossibleIntensityValue;
max_posible_intensity = Utilities.guessFibMaxValue(dib);
dib.Dispose();
this.min = 0;
this.max = max_posible_intensity;
this.max_possible = max_posible_intensity;
this.minNumericUpDown1.Minimum = Convert.ToDecimal(0);
this.maxNumericUpDown1.Minimum = Convert.ToDecimal(1);
this.minNumericUpDown1.Maximum = Convert.ToDecimal(this.max_possible - 1);
this.maxNumericUpDown1.Maximum = Convert.ToDecimal(this.max_possible);
this.minNumericUpDown2.Minimum = Convert.ToDecimal(0);
this.maxNumericUpDown2.Minimum = Convert.ToDecimal(1);
this.minNumericUpDown2.Maximum = Convert.ToDecimal(this.max_possible - 1);
this.maxNumericUpDown2.Maximum = Convert.ToDecimal(this.max_possible);
this.minNumericUpDown3.Minimum = Convert.ToDecimal(0);
this.maxNumericUpDown3.Minimum = Convert.ToDecimal(1);
this.minNumericUpDown3.Maximum = Convert.ToDecimal(this.max_possible - 1);
this.maxNumericUpDown3.Maximum = Convert.ToDecimal(this.max_possible);
this.minNumericUpDown1.Value = Convert.ToDecimal(Tile.scaleMin[0]);
this.minNumericUpDown2.Value = Convert.ToDecimal(Tile.scaleMin[1]);
this.minNumericUpDown3.Value = Convert.ToDecimal(Tile.scaleMin[2]);
this.maxNumericUpDown1.Value = Convert.ToDecimal(Tile.scaleMax[0]);
this.maxNumericUpDown2.Value = Convert.ToDecimal(Tile.scaleMax[1]);
this.maxNumericUpDown3.Value = Convert.ToDecimal(Tile.scaleMax[2]);
this.numericUpDown1X.Value = Convert.ToDecimal(Tile.channelShift[1].X);
this.numericUpDown1Y.Value = Convert.ToDecimal(Tile.channelShift[1].Y);
this.numericUpDown2X.Value = Convert.ToDecimal(Tile.channelShift[2].X);
this.numericUpDown2Y.Value = Convert.ToDecimal(Tile.channelShift[2].Y);
this.channelTitle1.Text = Tile.channelPrefix[0];
this.channelTitle2.Text = Tile.channelPrefix[1];
this.channelTitle3.Text = Tile.channelPrefix[2];
setComboBoxForFICC(this.comboBox1, Tile.channel[0]);
setComboBoxForFICC(this.comboBox2, Tile.channel[1]);
setComboBoxForFICC(this.comboBox3, Tile.channel[2]);
this.zedGraphControl1.GraphPane.XAxis.Scale.Min = 0;
this.zedGraphControl1.GraphPane.XAxis.Scale.Max = this.max;
this.zedGraphControl1.GraphPane.YAxis.Scale.Min = 0;
this.zedGraphControl1.GraphPane.YAxis.Scale.Max = 255;
this.zedGraphControl2.GraphPane.XAxis.Scale.Min = 0;
this.zedGraphControl2.GraphPane.XAxis.Scale.Max = this.max;
this.zedGraphControl2.GraphPane.YAxis.Scale.Min = 0;
this.zedGraphControl2.GraphPane.YAxis.Scale.Max = 255;
this.zedGraphControl3.GraphPane.XAxis.Scale.Min = 0;
this.zedGraphControl3.GraphPane.XAxis.Scale.Max = this.max;
this.zedGraphControl3.GraphPane.YAxis.Scale.Min = 0;
this.zedGraphControl3.GraphPane.YAxis.Scale.Max = 255;
this.cursor1_1.Position = Tile.scaleMin[0];
this.cursor1_2.Position = Tile.scaleMax[0];
this.cursor2_1.Position = Tile.scaleMin[1];
this.cursor2_2.Position = Tile.scaleMax[1];
this.cursor3_1.Position = Tile.scaleMin[2];
this.cursor3_2.Position = Tile.scaleMax[2];
this.DisplayPlot();
this.zedGraphControl1.AxisChange();
this.zedGraphControl2.AxisChange();
this.zedGraphControl3.AxisChange();
}
private void CreateGraph(ZedGraphControl zgc)
{
// Get a reference to the GraphPane
GraphPane myPane = zgc.GraphPane;
// Set the Titles
myPane.Title.Text = "Intensity Histogram";
myPane.XAxis.Title.Text = "Intensity";
myPane.YAxis.Title.Text = "Count";
TileView viewer = this.mosaicWindow.TileView;
List <Tile> tiles = viewer.GetVisibleTiles();
if (tiles == null)
{
return;
}
int[] total_red_hist = new int[256];
int[] total_green_hist = new int[256];
int[] total_blue_hist = new int[256];
ulong[] total_hist = new ulong[256];
int[] red_hist = null;
int[] green_hist = null;
int[] blue_hist = null;
ulong[] hist = null;
bool colourImage = false;
if (MosaicWindow.MosaicInfo.ColorDepth >= 24)
{
colourImage = true;
}
for (int i = 0; i < total_red_hist.Length; i++)
{
total_red_hist[i] = 0;
total_green_hist[i] = 0;
total_blue_hist[i] = 0;
}
double max_posible_intensity_in_images = 0.0;
foreach (Tile tile in tiles)
{
if (tile.IsDummy)
{
continue;
}
FreeImageAlgorithmsBitmap dib = tile.LoadFreeImageBitmap();
if (dib.MaximumPossibleIntensityValue > max_posible_intensity_in_images)
{
max_posible_intensity_in_images = dib.MaximumPossibleIntensityValue;
}
if (colourImage)
{
dib.GetHistogram(FREE_IMAGE_COLOR_CHANNEL.FICC_RED, out red_hist);
dib.GetHistogram(FREE_IMAGE_COLOR_CHANNEL.FICC_GREEN, out green_hist);
dib.GetHistogram(FREE_IMAGE_COLOR_CHANNEL.FICC_BLUE, out blue_hist);
}
else
{
dib.GetGreyLevelHistogram(256, out hist);
}
dib.Dispose();
for (int i = 0; i < total_red_hist.Length; i++)
{
if (colourImage)
{
total_red_hist[i] += red_hist[i];
total_green_hist[i] += green_hist[i];
total_blue_hist[i] += blue_hist[i];
}
else
{
total_hist[i] += hist[i];
}
}
}
double range_per_bin = max_posible_intensity_in_images / 256;
double x, y;
PointPairList red_list = new PointPairList();
PointPairList green_list = new PointPairList();
PointPairList blue_list = new PointPairList();
if (colourImage)
{
for (int i = 0; i < total_red_hist.Length; i++)
{
x = (double)i;
y = (double)total_red_hist[i];
red_list.Add(x, y);
y = (double)total_green_hist[i];
green_list.Add(x, y);
y = (double)total_blue_hist[i];
blue_list.Add(x, y);
}
// Generate a red curve with diamond
LineItem red_curve = myPane.AddCurve("",
red_list, Color.Red, SymbolType.None);
LineItem green_curve = myPane.AddCurve("",
green_list, Color.Green, SymbolType.None);
LineItem blue_curve = myPane.AddCurve("",
blue_list, Color.Blue, SymbolType.None);
}
else
{
for (int i = 0; i < total_red_hist.Length; i++)
{
x = (double)(i * range_per_bin);
y = (double)total_hist[i];
red_list.Add(x, y);
}
// Generate a red curve with diamond
// symbols, and "Porsche" in the legend
BarItem curve = myPane.AddBar("",
red_list, Color.Black);
}
zgc.AxisChange();
}
