public void TestInitialize()
{
mockServiceLocator = new Mock<IServiceLocator>();
mockEventAggregator = new Mock<IEventAggregator>();
experiment = TestHelper.GetTestExperiment(mockServiceLocator);
run = new Run(Path.GetFileName(Properties.Settings.Default.mzXMLTestFile1), Properties.Settings.Default.mzXMLTestFile1, new ProteinState(experiment), new Labeling(experiment), experiment, new ProteoWizardDataProvider(mockEventAggregator.Object));
}
public void TestInitialize()
{
IXYData xyData = new XYData(new double[] { 1, 2 }, new double[] { 3, 4 });
mockServiceLocator = new Mock<IServiceLocator>();
mockEventAggregator = new Mock<IEventAggregator>();
mockDataProvider = new Mock<IDataProvider>();
mockDataProvider.Setup(mock => mock.GetTotalIonChromatogram(TimeUnit.Seconds)).Returns(xyData);
mockDataProvider.Setup(mock => mock.GetExtractedIonChromatogram(2, 2, 0.5, TimeUnit.Seconds)).Returns(xyData);
mockDataProvider.Setup(mock => mock.GetSpectrum(2, 3, 3, 6, 0)).Returns(xyData);
experiment = Test.TestHelper.GetTestExperiment(mockServiceLocator);
run = new Run(Path.GetFileName(Properties.Settings.Default.mzXMLTestFile1), Properties.Settings.Default.mzXMLTestFile1, new ProteinState(experiment), new Labeling(experiment), experiment, mockDataProvider.Object);
}
public RunResult(FragmentIon fragmentIon, Run run)
: this()
{
this.fragmentIon = fragmentIon;
this.peptide = fragmentIon.Peptide;
this.run = run;
this.ActualPeaksInCalculation = fragmentIon.PeaksInCalculation;
this.ActualDeutDistThreshold = fragmentIon.DeutDistThreshold;
this.ActualDeutDistRightPadding = fragmentIon.DeutDistRightPadding;
this.IsResultBasedOnFragment = true;
}
public RunResult(Peptide peptide, Run run)
: this()
{
this.peptide = peptide;
this.run = run;
this.ActualPeaksInCalculation = peptide.PeaksInCalculation;
this.ActualDeutDistThreshold = peptide.DeuteriumDistributionThreshold;
this.ActualDeutDistRightPadding = peptide.DeuteriumDistributionRightPadding;
this.ActualXicAdjustment = peptide.XicAdjustment;
this.ActualXicSelectionWidth = peptide.XicSelectionWidth;
ActualPeaksInCalculation = peptide.PeaksInCalculation;
}
private static Hydra.Core.Domain.Run CreateRun(string filename, ProteinState proteinState, Labeling labeling, Experiment experiment, Mock<IEventAggregator> mockEventAggregator)
{
string runFileName = Path.GetFileName(filename);
File.Copy(filename, Path.Combine(TestExperimentDirectory, "Data", runFileName), true);
Hydra.Core.Domain.Run run = new Hydra.Core.Domain.Run(
@"Data\" + runFileName,
Path.Combine(TestExperimentDirectory, "Data", runFileName),
proteinState,
labeling,
experiment,
new ProteoWizardDataProvider(mockEventAggregator.Object));
return run;
}
private Experiment CreateTestExperiment()
{
Experiment experiment = hydraExperimentType.CreateExperiment(project, TestExperimentName) as Experiment;
ProteinState proteinState = new ProteinState(experiment);
Labeling labeling = new Labeling(experiment);
string runFileName = Path.GetFileName(Properties.Settings.Default.mzXMLTestFile1);
File.Copy(Properties.Settings.Default.mzXMLTestFile1, Path.Combine(TestExperimentDirectory, "Data", runFileName), true);
Run run = new Run(
@"Data\" + runFileName,
Path.Combine(TestExperimentDirectory, "Data", runFileName),
proteinState,
labeling,
experiment,
new ProteoWizardDataProvider(mockEventAggregator.Object));
experiment.Save();
return experiment as Experiment;
}
public RunResult GetRunResult(Result result, Run run, Peptide peptide)
{
return (from data in result.RunResults
where data.Run.FileName == run.FileName && (data.Peptide.MonoIsotopicMass == peptide.MonoIsotopicMass && data.Peptide.RT == peptide.RT && data.Peptide.ChargeState == peptide.ChargeState)
select data).FirstOrDefault();
}