public void AddRange(PolymorphismCollection otherPolys)
{
foreach (var v in otherPolys)
{
Add(v);
}
}
public PhyloTreeNodev2(XmlNode node, PhyloTreeNodev2 parentNode = null)
{
this.NodeID = ++NodeIDCounter;
Children = new List <PhyloTreeNodev2>();
Mutations = new PolymorphismCollection();
//set the haplogroup
haplogroup = new Haplogroup(node.Attributes.GetNamedItem("name").Value);
var details = node.SelectSingleNode("details");
haplogroup.AccessionId = details.Attributes.GetNamedItem("accessionNr").Value;
if (String.IsNullOrEmpty(haplogroup.AccessionId))
{
NodesWithNoAccession++;
}
haplogroup.Reference = details.Attributes.GetNamedItem("reference").Value;
//now copy polymorphism if needed
if (parentNode != null)
{
Mutations.AddRange(parentNode.Mutations);
}
//now update with the mutations here
var polys = details.SelectNodes("poly");
foreach (XmlNode p in polys)
{
if (p.InnerText.Contains("X"))
{ //System.Console.WriteLine("Skipping: " + p.InnerText);
continue;
}
var currentPoly = new Polymorphism(p.InnerText);
Mutations.Add(currentPoly);
}
//now make the children
var children = node.SelectNodes("haplogroup");
foreach (XmlNode currentElement in children)
{
Children.Add(new PhyloTreeNodev2(currentElement, this));
}
}
