private AbstractMutationStrategy YMutationStrategy(Grid2DDomain domain)
{
double range = (domain.Max.Y - domain.Min.Y) / 2.0; // Half model width
double resolution = 1.0;
return(PowerLawMutationStrategy.Create(range, resolution));
}
private AbstractMutationStrategy MaxHeaveMutationStrategy(Grid2DDomain domain)
{
double range = MaxMaxHeave(domain) / 2.0;
double resolution = 1.0f;
return(PowerLawMutationStrategy.Create(range, resolution));
}
private AbstractMutationStrategy DetachDepthMutationStrategy(Grid2DDomain domain)
{
double range = MaxDetachDepth(domain) / 2.0;
double resolution = 1.0;
return(PowerLawMutationStrategy.Create(range, resolution));
}
public static SinuousFaultGene Create(Grid2DDomain domain, double x0, double y0, double phi0,
double x1, double y1, double phi1,
double maxHeave, double detachDepth, double dip)
{
Debug.Assert(dip > 0.0 && dip <= 90.0);
return(new SinuousFaultGene(domain, x0, y0, phi0, x1, y1, phi1, maxHeave, detachDepth, dip));
}
private AbstractMutationStrategy RhoMutationStrategy(Grid2DDomain domain)
{
double r = (domain.Max - domain.Min).Magnitude / 2.0; // Half model diagonal
double k = 9.0; // ~ 1 metre
return(PowerLawMutationStrategy.Create(r, k));
}
private LinearFaultGene(Grid2DDomain domain, double rho, double theta, double faultThrow) :
base(domain, System.Enum.GetValues(typeof(DimIndex)).Length)
{
Dimensions[(int)DimIndex.Rho] = new Dimension(rho, RhoMutationStrategy(domain), RhoRangeStrategy(domain));
Dimensions[(int)DimIndex.Theta] = new Dimension(theta, ThetaMutationStrategy(domain), ThetaRangeStrategy(domain));
Dimensions[(int)DimIndex.Throw] = new Dimension(faultThrow, ThrowMutationStrategy(domain), ThrowRangeStrategy(domain));
}
public Gene(Grid2DDomain domain, int size)
{
Debug.Assert(domain != null);
this.domain = domain;
dimensions = new Dimension[size];
dimensionsIndexer = new DimensionIndexer(this);
}
private AbstractMutationStrategy DipMutationStrategy(Grid2DDomain domain)
{
// Should have ~1° resolution
double range = (maxFaultDip - minFaultDip) / 2.0;
double resolution = 1.0;
return(PowerLawMutationStrategy.Create(range, resolution));
}
public static LinearFaultGene Create(Grid2DDomain domain, double x, double y, double strike, double faultThrow)
{
Debug.Assert(strike >= 0.0 && strike < 360.0);
double theta = 360.0 - strike;
double rho = x * Math.Cos(theta) + y * Math.Sin(theta);
return(new LinearFaultGene(domain, rho, theta, faultThrow));
}
public Grid2DPhenotype(Grid2DDomain domain) :
base(domain)
{
Point2D origin = domain.Min;
Vector2D diagonal = domain.Max - domain.Min;
Vector2D spacing = new Vector2D(diagonal.DeltaX / domain.SizeI, diagonal.DeltaY / domain.SizeJ);
this.grid = new RegularGrid2D(origin, spacing, domain.SizeI, domain.SizeJ, 0.0);
}
public static LinearFaultGene CreateRandom(Grid2DDomain domain)
{
double x = Rng.ContinuousUniform(domain.Min.X, domain.Max.X);
double y = Rng.ContinuousUniform(domain.Min.Y, domain.Max.Y);
double strike = Rng.ContinuousUniform(0.0, 360.0);
double faultThrow = Rng.ContinuousUniform(0.0, 50.0);
return(Create(domain, x, y, strike, faultThrow));
}
private SinuousFaultGene(Grid2DDomain domain, double x0, double y0, double phi0,
double x1, double y1, double phi1,
double maxHeave, double detachDepth, double dip) :
base(domain, System.Enum.GetValues(typeof(DimIndex)).Length)
{
Dimensions[(int)DimIndex.X0] = new Dimension(x0, XMutationStrategy(domain), XRangeStrategy(domain));
Dimensions[(int)DimIndex.Y0] = new Dimension(y0, YMutationStrategy(domain), YRangeStrategy(domain));
Dimensions[(int)DimIndex.Phi0] = new Dimension(phi0, PhiMutationStrategy(domain), PhiRangeStrategy(domain));
Dimensions[(int)DimIndex.X1] = new Dimension(x1, XMutationStrategy(domain), XRangeStrategy(domain));
Dimensions[(int)DimIndex.Y1] = new Dimension(y1, YMutationStrategy(domain), YRangeStrategy(domain));
Dimensions[(int)DimIndex.Phi1] = new Dimension(phi1, PhiMutationStrategy(domain), PhiRangeStrategy(domain));
Dimensions[(int)DimIndex.DetachDepth] = new Dimension(detachDepth, DetachDepthMutationStrategy(domain), DetachDepthRangeStrategy(domain));
Dimensions[(int)DimIndex.MaxHeave] = new Dimension(maxHeave, MaxHeaveMutationStrategy(domain), MaxHeaveRangeStrategy(domain));
Dimensions[(int)DimIndex.Dip] = new Dimension(dip, DipMutationStrategy(domain), DipRangeStrategy(domain));
}
//public static SinuousFaultGene CreateRandom(Grid2DDomain domain)
//{
// double border = Border(domain);
// double x0 = Rng.ContinuousUniform(domain.Min.X - border, domain.Max.X + border);
// double y0 = Rng.ContinuousUniform(domain.Min.Y - border, domain.Max.Y + border);
// double phi0 = Rng.ContinuousUniform(-tipTangentAngle, +tipTangentAngle);
// double x1 = Rng.ContinuousUniform(domain.Min.X - border, domain.Max.X + border);
// double y1 = Rng.ContinuousUniform(domain.Min.Y - border, domain.Max.Y + border);
// double phi1 = Rng.ContinuousUniform(-tipTangentAngle, +tipTangentAngle);
// double detachDepth = Rng.ContinuousUniform(MinDetachDepth(domain), MaxDetachDepth(domain));
// double maxHeave = Rng.ContinuousUniform(MinMaxHeave(domain), MaxMaxHeave(domain), false);
// double dip = Rng.ContinuousUniform(minFaultDip, maxFaultDip);
// return Create(domain, x0, y0, phi0, x1, y1, phi1, maxHeave, detachDepth, dip);
//}
public static SinuousFaultGene CreateRandom(Grid2DDomain domain)
{
// Select a point to be on the centre of a straight line
// joining the fault tips
double border = Border(domain);
Point2D centre = new Point2D(Rng.ContinuousUniform(domain.Min.X - border, domain.Max.X + border),
Rng.ContinuousUniform(domain.Min.Y - border, domain.Max.Y + border));
// Select a fault orientation - select a dip azimuth from the
// distribution, and convert it into a fault strike.
double dipAzimuth = domain.RandomHistogramDipAzimuth();
// Fault strike should be 90° anti-clockwise of surface dip
double faultStrike = dipAzimuth - Math.PI / 2.0;
// Select a fault length from the domain length scale distribution
double faultLength = Rng.ContinuousUniformZeroToN((domain.Max - domain.Min).Magnitude);
Vector2D halfCentreLine = new Vector2D(Math.Cos(faultStrike) * faultLength / 2.0,
Math.Sin(faultStrike) * faultLength / 2.0);
Point2D p0 = centre - halfCentreLine;
Point2D p1 = centre + halfCentreLine;
double phi0 = Rng.ContinuousUniform(-tipTangentAngle, +tipTangentAngle);
double phi1 = Rng.ContinuousUniform(-tipTangentAngle, +tipTangentAngle);
double detachDepth = Rng.ContinuousUniform(MinDetachDepth(domain), MaxDetachDepth(domain));
double maxFaultHeave = faultLength / minFaultDisplacementLengthRatio;
double lowerFaultHeave = MinMaxHeave(domain);
double upperFaultHeave = Math.Max(Math.Min(maxFaultHeave, detachDepth / 2.0) / 10.0, lowerFaultHeave);
double maxHeave = Rng.ContinuousUniform(lowerFaultHeave, upperFaultHeave, false);
double dip = Rng.ContinuousUniform(minFaultDip, maxFaultDip);
return(Create(domain, p0.X, p0.Y, phi0, p1.X, p1.Y, phi1, maxHeave, detachDepth, dip));
}
private AbstractRangeStrategy RhoRangeStrategy(Grid2DDomain domain)
{
double diagonal = (domain.Max - domain.Min).Magnitude;
return(ClipRangeStrategy.Create(-diagonal, diagonal));
}
private static double MinMaxHeave(Grid2DDomain domain)
{
return(25.0); // metres
}
private AbstractMutationStrategy ThetaMutationStrategy(Grid2DDomain domain)
{
// Half-circle range, with 1° resolution
return(PowerLawMutationStrategy.Create(180.0, 7.49f));
}
private AbstractRangeStrategy DipRangeStrategy(Grid2DDomain domain)
{
return(ReflectRangeStrategy.Create(minFaultDip, maxFaultDip));
}
private AbstractRangeStrategy ThetaRangeStrategy(Grid2DDomain domain)
{
return(ModalRangeStrategy.Create(0.0, 360.0));
}
private AbstractRangeStrategy MaxHeaveRangeStrategy(Grid2DDomain domain)
{
return(ClipRangeStrategy.Create(MinMaxHeave(domain), MaxMaxHeave(domain)));
}
private AbstractMutationStrategy ThrowMutationStrategy(Grid2DDomain domain)
{
return(PowerLawMutationStrategy.Create(50.0, 9.0));
}
private AbstractRangeStrategy DetachDepthRangeStrategy(Grid2DDomain domain)
{
return(ClipRangeStrategy.Create(MinDetachDepth(domain), MaxDetachDepth(domain)));
}
private AbstractMutationStrategy PhiMutationStrategy(Grid2DDomain domain)
{
return(PowerLawMutationStrategy.Create(tipTangentAngle, 1.0)); // 1° resolution
}
private AbstractRangeStrategy PhiRangeStrategy(Grid2DDomain domain)
{
return(ModalRangeStrategy.Create(-tipTangentAngle, tipTangentAngle));
}
private AbstractRangeStrategy YRangeStrategy(Grid2DDomain domain)
{
double border = Border(domain);
return(ClipRangeStrategy.Create(domain.Min.Y - border, domain.Max.Y + border));
}
private AbstractRangeStrategy ThrowRangeStrategy(Grid2DDomain domain)
{
return(ClipRangeStrategy.Create(0.0, 200.0));
}
private static double Border(Grid2DDomain domain)
{
double diagonal = (domain.Max - domain.Min).Magnitude;
return(diagonal * borderProportion);
}
private static double MinDetachDepth(Grid2DDomain domain)
{
return(1000.0); // metres - Must be greater than 0.0
}
private static double MaxDetachDepth(Grid2DDomain domain)
{
// TODO: Should have 3D bounds on domain
return(Border(domain) / 2.0);
}
private static double MaxMaxHeave(Grid2DDomain domain)
{
return(MaxDetachDepth(domain) / 20.0); // Reduced by factor of ten
}
static int Main(string[] args)
{
// Get a URI from the command line argument
Uri uri;
try
{
uri = new Uri(args[0]);
}
catch (UriFormatException)
{
string absPath = Directory.GetCurrentDirectory() + Path.DirectorySeparatorChar + args[0];
try
{
uri = new Uri(absPath);
}
catch (UriFormatException)
{
return(1);
}
}
ReportLogger.Instance.Create("report.xml");
ReportLogger.Instance.Writer.WriteStartDocument();
ReportLogger.Instance.Writer.WriteStartElement("GeodysseyRun");
Stopwatch overallWatch = new Stopwatch();
overallWatch.Start();
//Console.WriteLine("Start!");
int initialMinimumGenomeLength = 50;
int initialMaximumGenomeLength = 100;
int initialPopulationSize = 1000;
int finalPopulationSize = 100;
int numberOfGenerations = 100;
double populationPowerBase = Math.Pow((double)finalPopulationSize / (double)initialPopulationSize, 1.0 / numberOfGenerations);
int totalNumberOfIndividuals = 0;
// Determine how many individuals will be produced in this run
for (int i = 0; i < numberOfGenerations; ++i)
{
int inc = (int)Math.Round(initialPopulationSize * Math.Pow(populationPowerBase, i + 1));
//Console.WriteLine(inc);
totalNumberOfIndividuals += inc;
}
Console.WriteLine("Total Number of Individuals = {0}", totalNumberOfIndividuals);
Console.WriteLine("Mean Invididuals per Generation = {0}", totalNumberOfIndividuals / numberOfGenerations);
// Load a target grid
//RegularGrid2D targetGrid;
//using (StreamReader reader = File.OpenText("target.grd"))
//{
// targetGrid = RegularGrid2D.Create(reader);
//}
GeodysseyModel model = new GeodysseyModel();
LoaderController.Instance.Open(uri, model);
IRegularGrid2D targetGrid = model[0]; // The first grid
Debug.Assert(targetGrid != null);
Grid2DDomain domain = new Grid2DDomain(targetGrid);
Stopwatch stopWatch = new Stopwatch();
Population population = new Population(domain, initialPopulationSize, initialMinimumGenomeLength, initialMaximumGenomeLength);
for (int i = 0; i < numberOfGenerations; ++i)
{
stopWatch.Reset();
stopWatch.Start();
population.ComputeFitnesses();
stopWatch.Stop();
TimeSpan ts = stopWatch.Elapsed;
ReportLogger.Instance.Writer.WriteStartElement("Generation");
ReportLogger.Instance.Writer.WriteStartAttribute("number");
ReportLogger.Instance.Writer.WriteValue(i + 1);
ReportLogger.Instance.Writer.WriteEndAttribute();
ReportLogger.Instance.Writer.WriteStartAttribute("elapsedTime");
ReportLogger.Instance.Writer.WriteValue(ts);
ReportLogger.Instance.Writer.WriteEndAttribute();
RecordBest(targetGrid, population, i, domain);
population.LogSummaryStatistics();
ReportLogger.Instance.Writer.WriteEndElement();
Console.WriteLine("Generation {0} of {1} with size {2} in {3}) ", i + 1, numberOfGenerations, population.Count, ts);
int nextGenerationSize = (int)Math.Round(initialPopulationSize * Math.Pow(populationPowerBase, i + 1));
population.Evolve(nextGenerationSize);
}
population.ComputeFitnesses();
RecordBest(targetGrid, population, numberOfGenerations, domain);
Console.WriteLine("Generation {0} of {1} with size {2}) ", numberOfGenerations, numberOfGenerations, population.Count);
overallWatch.Stop();
Console.WriteLine("Running time : {0}", overallWatch.Elapsed);
ReportLogger.Instance.Writer.WriteEndElement();
ReportLogger.Instance.Writer.WriteEndDocument();
ReportLogger.Instance.Close();
Console.ReadKey();
return(0);
}