public void ChangeSequence(int len)
{
if (len < 0)
{
throw new ArgumentException("Could not change sequence: illegal sequence length");
}
this.WipeCell();
this.dna = FrameshiftUtil.GenerateDNASequence(len);
this.rna = Polymerase.Transcribe(this.dna);
this.pro = this.rib.Translate(this.rna);
}
public NormalCell(int sequenceLength)
{
if (sequenceLength < 0)
{
throw new ArgumentException("Illegal sequence length");
}
List <AACodon> stops = new List <AACodon>
{
AACodon.UGA,
AACodon.UAA,
AACodon.UAG
};
this.rib = new Ribosome(AACodon.AUG, stops, new AAFactory(), 3);
this.dna = FrameshiftUtil.GenerateDNASequence(sequenceLength);
this.rna = Polymerase.Transcribe(this.dna);
this.pro = this.rib.Translate(this.rna);
}
/// <summary>
/// Given an amino acid codon, returns a sequence of
/// nucleobases corresponding to that codon
/// </summary>
/// <param name="codon">Codon to break down</param>
/// <returns>Array of appropriate bases</returns>
public static Nucleobase[] BreakAACodon(AACodon codon)
{
return(FrameshiftUtil.StringSeq(codon.ToString())); //TODO
}
