public IntensityNormalizationEngine(FlashLfqResults results, bool integrate, bool silent, int maxThreads)
{
this.results = results;
this.integrate = integrate;
this.silent = silent;
this.maxThreads = maxThreads;
}
public void MergeResultsWith(FlashLfqResults mergeFrom)
{
this.SpectraFiles.AddRange(mergeFrom.SpectraFiles);
foreach (var pep in mergeFrom.PeptideModifiedSequences)
{
if (this.PeptideModifiedSequences.TryGetValue(pep.Key, out var peptide))
{
Peptide mergeFromPep = pep.Value;
Peptide mergeToPep = peptide;
foreach (SpectraFileInfo file in mergeFrom.SpectraFiles)
{
mergeToPep.SetIntensity(file, mergeFromPep.GetIntensity(file));
mergeToPep.SetDetectionType(file, mergeFromPep.GetDetectionType(file));
}
}
else
{
this.PeptideModifiedSequences.Add(pep.Key, pep.Value);
}
}
foreach (var pg in mergeFrom.ProteinGroups)
{
if (this.ProteinGroups.TryGetValue(pg.Key, out var proteinGroup))
{
ProteinGroup mergeFromPg = pg.Value;
ProteinGroup mergeToPg = proteinGroup;
foreach (SpectraFileInfo file in mergeFrom.SpectraFiles)
{
mergeToPg.SetIntensity(file, mergeFromPg.GetIntensity(file));
}
}
else
{
this.ProteinGroups.Add(pg.Key, pg.Value);
}
}
foreach (var fromPeaks in mergeFrom.Peaks)
{
if (this.Peaks.TryGetValue(fromPeaks.Key, out var toPeaks))
{
toPeaks.AddRange(fromPeaks.Value);
}
else
{
this.Peaks.Add(fromPeaks.Key, fromPeaks.Value);
}
}
}
/// <summary>
/// Constructs the protein quantification engine
/// </summary>
public ProteinQuantificationEngine(FlashLfqResults results, int maxThreads)
{
this.maxThreads = maxThreads;
this.results = results;
}
