//Method that sets the var codon and the ref codon of the mutation by using _chrom, _position and offset.
private void setVarRefCodons(int offset)
{
if (offset != -1)
{
_refCodon = UcscWebServices.getCodonAt(_chrom, _position, offset);
char[] temp = _refCodon.ToCharArray();
temp[offset] = _var;
_varCodon = new string(temp);
if (_gene.Strand.Equals('-'))
{
_refCodon = GeneralMethods.reverseString(OppositeCodon(_refCodon));
_varCodon = GeneralMethods.reverseString(OppositeCodon(_varCodon));
}
}
else
{
_refCodon = "No Coding";
_varCodon = "No Coding";
}
}