public void SetUp()
{
_env = new ApplicationEnvironment();
ProjectInfo info = ProjectInfoLoader.Load(TestConstant.Project_Drosophila);
_unitUnderTest = new Project(info, _env);
_unitUnderTest.UnLock();
_unitUnderTest.LoadModel();
}
public void SetUp()
{
_env = new ApplicationEnvironment();
_unitUnderTest = _env.PluginManager;
// Load plugins
foreach (string pluginDir in Util.GetPluginDirs())
{
string[] files = Directory.GetFiles(
pluginDir,
Constants.delimiterWildcard + Constants.FileExtPlugin);
foreach (string fileName in files)
{
_env.PluginManager.LoadPlugin(fileName);
}
}
}
/// <summary>
/// Creates the new "DynamicModuleManager" instance with no argument.
/// </summary>
public DynamicModuleManager(ApplicationEnvironment env)
{
this.m_env = env;
// ������DM����[�h����DM�̐���A�v���p�e�B����擾����
// ���A���̂Ƃ���v���p�e�B����lj������Ƃ�s��
DynamicModule tmp = null;
tmp = new DynamicModule("ConstantFluxProcess", "", false, "ConstantFluxProcess");
tmp.AddProperty("Activity", true, true, false, false, (double)0.0, typeof(double));
tmp.AddProperty("IsContinuous", false, true, false, false, 1, typeof(int));
tmp.AddProperty("Name", true, true, true, true, "", typeof(string));
tmp.AddProperty("Priority", true, true, true, true, 0, typeof(int));
tmp.AddProperty("StepperID", true, true, true, true, "", typeof(string));
tmp.AddProperty("VariableReferenceList", true, true, true, true, "", typeof(List<EcellValue>));
tmp.AddProperty("k", true, true, true, true, (double)0.0, typeof(double));
this.m_moduleDic.Add(tmp.Name, tmp);
tmp = new DynamicModule("DecayFluxProcess", "", false, "DecayFluxProcess");
tmp.AddProperty("Activity", true, true, false, false, (double)0.0, typeof(double));
tmp.AddProperty("IsContinuous", false, true, false, false, 1, typeof(int));
tmp.AddProperty("Name", true, true, true, true, "", typeof(string));
tmp.AddProperty("Priority", true, true, true, true, 0, typeof(int));
tmp.AddProperty("StepperID", true, true, true, true, "", typeof(string));
tmp.AddProperty("VariableReferenceList", true, true, true, true, "", typeof(List<EcellValue>));
tmp.AddProperty("T", true, true, true, true, (double)1.0, typeof(double));
this.m_moduleDic.Add(tmp.Name, tmp);
tmp = new DynamicModule("ExpressionAlgebraicProcess", "", false, "ExpressionAlgebraicProcess");
tmp.AddProperty("Activity", true, true, false, false, (double)0.0, typeof(double));
tmp.AddProperty("IsContinuous", false, true, false, false, 0, typeof(int));
tmp.AddProperty("Name", true, true, true, true, "", typeof(string));
tmp.AddProperty("Priority", true, true, true, true, 0, typeof(int));
tmp.AddProperty("StepperID", true, true, true, true, "", typeof(string));
tmp.AddProperty("VariableReferenceList", true, true, true, true, "", typeof(List<EcellValue>));
tmp.AddProperty("Expression", true, true, true, true, "self.getSuperSystem().SizeN_A", typeof(string));
this.m_moduleDic.Add(tmp.Name, tmp);
tmp = new DynamicModule("ExpressionFluxProcess", "", false, "ExpressionFluxProcess");
tmp.AddProperty("Activity", true, true, false, false, (double)0.0, typeof(double));
tmp.AddProperty("IsContinuous", false, true, false, false, 1, typeof(int));
tmp.AddProperty("Name", true, true, true, true, "", typeof(string));
tmp.AddProperty("Priority", true, true, true, true, 0, typeof(int));
tmp.AddProperty("StepperID", true, true, true, true, "", typeof(string));
tmp.AddProperty("VariableReferenceList", true, true, true, true, "", typeof(List<EcellValue>));
tmp.AddProperty("Expression", true, true, true, true, "self.getSuperSystem().SizeN_A", typeof(string));
this.m_moduleDic.Add(tmp.Name, tmp);
tmp = new DynamicModule("GillespieProcess", "", false, "GillespieProcess");
tmp.AddProperty("Activity", true, true, false, false, (double)0.0, typeof(double));
tmp.AddProperty("IsContinuous", false, true, false, false, 0, typeof(int));
tmp.AddProperty("Name", true, true, true, true, "", typeof(string));
tmp.AddProperty("Priority", true, true, true, true, 0, typeof(int));
tmp.AddProperty("StepperID", true, true, true, true, "", typeof(string));
tmp.AddProperty("VariableReferenceList", true, true, true, true, "", typeof(List<EcellValue>));
tmp.AddProperty("MuV", true, true, true, true, (double)0.0, typeof(double));
tmp.AddProperty("DependentProcessList", false, true, false, true, "", typeof(List<EcellValue>));
tmp.AddProperty("Order", false, true, false, false, 0, typeof(int));
tmp.AddProperty("StepInterval", false, true, false, false, (double)0.0, typeof(double));
tmp.AddProperty("k", true, true, true, true, (double)1.0, typeof(double));
this.m_moduleDic.Add(tmp.Name, tmp);
tmp = new DynamicModule("GMAProcess", "", false, "GMAProcess");
tmp.AddProperty("Activity", true, true, false, false, (double)0.0, typeof(double));
tmp.AddProperty("IsContinuous", false, true, false, false, 1, typeof(int));
tmp.AddProperty("Name", true, true, true, true, "", typeof(string));
tmp.AddProperty("Priority", true, true, true, true, 0, typeof(int));
tmp.AddProperty("StepperID", true, true, true, true, "", typeof(string));
tmp.AddProperty("VariableReferenceList", true, true, true, true, "", typeof(List<EcellValue>));
tmp.AddProperty("GMASystemMatrix", true, true, true, true, "", typeof(List<EcellValue>));
tmp.AddProperty("Order", true, true, true, true, 0, typeof(int));
this.m_moduleDic.Add(tmp.Name, tmp);
tmp = new DynamicModule("MassActionFluxProcess", "", false, "MassActionFluxProcess");
tmp.AddProperty("Activity", true, true, false, false, (double)0.0, typeof(double));
tmp.AddProperty("IsContinuous", false, true, false, false, 1, typeof(int));
tmp.AddProperty("Name", true, true, true, true, "", typeof(string));
tmp.AddProperty("Priority", true, true, true, true, 0, typeof(int));
tmp.AddProperty("StepperID", true, true, true, true, "", typeof(string));
tmp.AddProperty("VariableReferenceList", true, true, true, true, "", typeof(List<EcellValue>));
tmp.AddProperty("k", true, true, true, true, (double)1.0, typeof(double));
this.m_moduleDic.Add(tmp.Name, tmp);
tmp = new DynamicModule("MichaelisUniUniFluxProcess", "", false, "MichaelisUniUniFluxProcess");
tmp.AddProperty("Activity", true, true, false, false, (double)0.0, typeof(double));
tmp.AddProperty("IsContinuous", false, true, false, false, 1, typeof(int));
tmp.AddProperty("Name", true, true, true, true, "", typeof(string));
tmp.AddProperty("Priority", true, true, true, true, 0, typeof(int));
tmp.AddProperty("StepperID", true, true, true, true, "", typeof(string));
tmp.AddProperty("VariableReferenceList", true, true, true, true, "", typeof(List<EcellValue>));
tmp.AddProperty("KcF", true, true, true, true, (double)0.0, typeof(double));
tmp.AddProperty("KcR", true, true, true, true, (double)0.0, typeof(double));
tmp.AddProperty("KmP", true, true, true, true, (double)0.0, typeof(double));
tmp.AddProperty("KmS", true, true, true, true, (double)0.0, typeof(double));
this.m_moduleDic.Add(tmp.Name, tmp);
tmp = new DynamicModule("PythonFluxProcess", "", false, "PythonFluxProcess");
tmp.AddProperty("Activity", true, true, false, false, (double)0.0, typeof(double));
tmp.AddProperty("IsContinuous", false, true, false, false, 1, typeof(int));
tmp.AddProperty("Name", true, true, true, true, "", typeof(string));
tmp.AddProperty("Priority", true, true, true, true, 0, typeof(int));
tmp.AddProperty("StepperID", true, true, true, true, "", typeof(string));
tmp.AddProperty("VariableReferenceList", true, true, true, true, "", typeof(List<EcellValue>));
tmp.AddProperty("Expression", true, true, true, true, "", typeof(string));
this.m_moduleDic.Add(tmp.Name, tmp);
tmp = new DynamicModule("PythonProcess", "", false, "PythonProcess");
tmp.AddProperty("Activity", true, true, false, false, (double)0.0, typeof(double));
tmp.AddProperty("IsContinuous", false, true, false, false, 1, typeof(int));
tmp.AddProperty("Name", true, true, true, true, "", typeof(string));
tmp.AddProperty("Priority", true, true, true, true, 0, typeof(int));
tmp.AddProperty("StepperID", true, true, true, true, "", typeof(string));
tmp.AddProperty("VariableReferenceList", true, true, true, true, "", typeof(List<EcellValue>));
tmp.AddProperty("FireMethod", true, true, true, true, "", typeof(string));
tmp.AddProperty("InitializeMethod", true, true, true, true, "", typeof(string));
this.m_moduleDic.Add(tmp.Name, tmp);
tmp = new DynamicModule("QuasiDynamicFluxProcess", "", false, "QuasiDynamicFluxProcess");
tmp.AddProperty("Activity", true, true, false, false, (double)0.0, typeof(double));
tmp.AddProperty("IsContinuous", false, true, false, false, 0, typeof(int));
tmp.AddProperty("Name", true, true, true, true, "", typeof(string));
tmp.AddProperty("Priority", true, true, true, true, 0, typeof(int));
tmp.AddProperty("StepperID", true, true, true, true, "", typeof(string));
tmp.AddProperty("VariableReferenceList", true, true, true, true, "", typeof(List<EcellValue>));
tmp.AddProperty("Irreversible", true, true, true, true, 0, typeof(int));
this.m_moduleDic.Add(tmp.Name, tmp);
tmp = new DynamicModule("SSystemProcess", "", false, "SSystemProcess");
tmp.AddProperty("Activity", true, true, false, false, (double)0.0, typeof(double));
tmp.AddProperty("IsContinuous", false, true, false, false, 0, typeof(int));
tmp.AddProperty("Name", true, true, true, true, "", typeof(string));
tmp.AddProperty("Priority", true, true, true, true, 0, typeof(int));
tmp.AddProperty("StepperID", true, true, true, true, "", typeof(string));
tmp.AddProperty("VariableReferenceList", true, true, true, true, "", typeof(List<EcellValue>));
tmp.AddProperty("SSystemMatrix", true, true, true, true, "", typeof(List<EcellValue>));
this.m_moduleDic.Add(tmp.Name, tmp);
//
tmp = new DynamicModule("DAEStepper", "", false, "DAEStepper");
tmp.AddProperty("AbsoluteTolerance", true, true, true, true, (double)1e-10, typeof(double));
tmp.AddProperty("CurrentTime", false, true, false, false, (double)0.0, typeof(double));
tmp.AddProperty("DependentStepperList", false, true, false, false, "", typeof(List<EcellValue>));
tmp.AddProperty("JacobianRecalculateTheta", true, true, true, true, (double)0.001, typeof(double));
tmp.AddProperty("MaxIterationNumber", true, true, true, true, 7, typeof(int));
tmp.AddProperty("MaxStepInterval", true, true, true, true, Double.Parse("+��"), typeof(double));
tmp.AddProperty("MinStepInterval", true, true, true, true, Double.Parse("-��"), typeof(double));
tmp.AddProperty("NextStepInterval", false, true, false, false, (double)0.001, typeof(double));
tmp.AddProperty("OriginalStepInterval", true, true, false, false, (double)0.001, typeof(double));
tmp.AddProperty("Priority", true, true, true, true, 0, typeof(int));
tmp.AddProperty("ProcessList", false, true, false, false, "", typeof(List<EcellValue>));
tmp.AddProperty("ReadVariableList", false, true, false, false, "", typeof(List<EcellValue>));
tmp.AddProperty("RelativeTolerance", true, true, true, true, (double)1e-10, typeof(double));
tmp.AddProperty("RngSeed", true, false, true, false, "", typeof(string));
tmp.AddProperty("SystemList", false, true, false, false, "", typeof(List<EcellValue>));
tmp.AddProperty("Uround", true, true, true, true, (double)1e-16, typeof(double));
tmp.AddProperty("WriteVariableList", false, true, false, false, "", typeof(List<EcellValue>));
this.m_moduleDic.Add(tmp.Name, tmp);
tmp = new DynamicModule("ESSYNSStepper", "", false, "ESSYNSStepper");
tmp.AddProperty("AbsoluteEpsilon", true, true, true, true, (double)0.1, typeof(double));
tmp.AddProperty("AbsoluteToleranceFactor", true, true, true, true, (double)1.0, typeof(double));
tmp.AddProperty("CurrentTime", false, true, false, false, (double)0.0, typeof(double));
tmp.AddProperty("DependentStepperList", false, true, false, false, "", typeof(List<EcellValue>));
tmp.AddProperty("DerivativeToleranceFactor", true, true, true, true, (double)1.001, typeof(double));
tmp.AddProperty("MaxErrorRatio", false, true, false, false, (double)1.0, typeof(double));
tmp.AddProperty("MaxStepInterval", true, true, true, true, (double)1e+100, typeof(double));
tmp.AddProperty("MinStepInterval", true, true, true, true, (double)1e-100, typeof(double));
tmp.AddProperty("NextStepInterval", false, true, false, false, (double)0.001, typeof(double));
tmp.AddProperty("Order", false, true, false, false, 1, typeof(int));
tmp.AddProperty("OriginalStepInterval", true, true, false, false, (double)0.001, typeof(double));
tmp.AddProperty("Priority", true, true, true, true, 0, typeof(int));
tmp.AddProperty("ProcessList", false, true, false, false, "", typeof(List<EcellValue>));
tmp.AddProperty("ReadVariableList", false, true, false, false, "", typeof(List<EcellValue>));
tmp.AddProperty("RelativeEpsilon", true, true, true, true, (double)0.1, typeof(double));
tmp.AddProperty("RngSeed", true, false, true, false, "", typeof(string));
tmp.AddProperty("StateToleranceFactor", true, true, true, true, (double)1.0, typeof(double));
tmp.AddProperty("StepInterval", true, true, true, true, (double)0.001, typeof(double));
tmp.AddProperty("SystemList", false, true, false, false, "", typeof(List<EcellValue>));
tmp.AddProperty("TaylorOrder", true, true, true, true, 1, typeof(int));
tmp.AddProperty("Tolerance", true, true, true, true, (double)1e-6, typeof(double));
tmp.AddProperty("WriteVariableList", false, true, false, false, "", typeof(List<EcellValue>));
this.m_moduleDic.Add(tmp.Name, tmp);
tmp = new DynamicModule("FixedDAE1Stepper", "", false, "FixedDAE1Stepper");
tmp.AddProperty("CurrentTime", false, true, false, false, (double)0.0, typeof(double));
tmp.AddProperty("DependentStepperList", false, true, false, false, "", typeof(List<EcellValue>));
tmp.AddProperty("MaxStepInterval", true, true, true, true, Double.Parse("+��"), typeof(double));
tmp.AddProperty("MinStepInterval", true, true, true, true, Double.Parse("-��"), typeof(double));
tmp.AddProperty("NextStepInterval", false, true, false, false, (double)0.001, typeof(double));
tmp.AddProperty("OriginalStepInterval", true, true, false, false, (double)0.001, typeof(double));
tmp.AddProperty("PerturbationRate", true, true, true, true, (double)1.0000000000000001e-09, typeof(double));
tmp.AddProperty("Priority", true, true, true, true, 0, typeof(int));
tmp.AddProperty("ProcessList", false, true, false, false, "", typeof(List<EcellValue>));
tmp.AddProperty("ReadVariableList", false, true, false, false, "", typeof(List<EcellValue>));
tmp.AddProperty("RngSeed", true, true, true, true, "", typeof(string));
tmp.AddProperty("StepInterval", true, true, true, true, (double)0.001, typeof(double));
tmp.AddProperty("SystemList", false, true, false, false, "", typeof(List<EcellValue>));
tmp.AddProperty("Tolerance", true, true, true, true, (double)1e-10, typeof(double));
tmp.AddProperty("WriteVariableList", false, true, false, false, "", typeof(List<EcellValue>));
this.m_moduleDic.Add(tmp.Name, tmp);
tmp = new DynamicModule("FixedODE1Stepper", "", false, "FixedODE1Stepper");
tmp.AddProperty("CurrentTime", false, true, false, false, (double)0.0, typeof(double));
tmp.AddProperty("DependentStepperList", false, true, false, false, "", typeof(List<EcellValue>));
tmp.AddProperty("MaxStepInterval", true, true, true, true, Double.Parse("+��"), typeof(double));
tmp.AddProperty("MinStepInterval", true, true, true, true, Double.Parse("-��"), typeof(double));
tmp.AddProperty("NextStepInterval", false, true, false, false, (double)0.001, typeof(double));
tmp.AddProperty("OriginalStepInterval", true, true, false, false, (double)0.001, typeof(double));
tmp.AddProperty("Priority", true, true, true, true, 0, typeof(int));
tmp.AddProperty("ProcessList", false, true, false, false, "", typeof(List<EcellValue>));
tmp.AddProperty("ReadVariableList", false, true, false, false, "", typeof(List<EcellValue>));
tmp.AddProperty("RngSeed", true, false, true, false, "", typeof(string));
tmp.AddProperty("StepInterval", true, true, true, true, (double)0.001, typeof(double));
tmp.AddProperty("SystemList", false, true, false, false, "", typeof(List<EcellValue>));
tmp.AddProperty("WriteVariableList", false, true, false, false, "", typeof(List<EcellValue>));
this.m_moduleDic.Add(tmp.Name, tmp);
tmp = new DynamicModule("FluxDistributionStepper", "", false, "FluxDistributionStepper");
tmp.AddProperty("CurrentTime", false, true, false, false, (double)0.0, typeof(double));
tmp.AddProperty("DependentStepperList", false, true, false, false, "", typeof(List<EcellValue>));
tmp.AddProperty("MaxStepInterval", true, true, true, true, Double.Parse("+��"), typeof(double));
tmp.AddProperty("MinStepInterval", true, true, true, true, Double.Parse("-��"), typeof(double));
tmp.AddProperty("OriginalStepInterval", true, true, false, false, (double)0.001, typeof(double));
tmp.AddProperty("Priority", true, true, true, true, 0, typeof(int));
tmp.AddProperty("ProcessList", false, true, false, false, "", typeof(List<EcellValue>));
tmp.AddProperty("ReadVariableList", false, true, false, false, "", typeof(List<EcellValue>));
tmp.AddProperty("RngSeed", true, false, true, false, "", typeof(string));
tmp.AddProperty("StepInterval", true, true, true, true, (double)0.001, typeof(double));
tmp.AddProperty("SystemList", false, true, false, false, "", typeof(List<EcellValue>));
tmp.AddProperty("WriteVariableList", false, true, false, false, "", typeof(List<EcellValue>));
this.m_moduleDic.Add(tmp.Name, tmp);
tmp = new DynamicModule("ODE23Stepper", "", false, "ODE23Stepper");
tmp.AddProperty("AbsoluteEpsilon", true, true, true, true, (double)0.1, typeof(double));
tmp.AddProperty("AbsoluteToleranceFactor", true, true, true, true, (double)1.0, typeof(double));
tmp.AddProperty("CurrentTime", false, true, false, false, (double)0.0, typeof(double));
tmp.AddProperty("DependentStepperList", false, true, false, false, "", typeof(List<EcellValue>));
tmp.AddProperty("DerivativeToleranceFactor", true, true, true, true, (double)1.0, typeof(double));
tmp.AddProperty("MaxErrorRatio", false, true, false, false, (double)1.0, typeof(double));
tmp.AddProperty("MaxStepInterval", true, true, true, true, (double)1e+100, typeof(double));
tmp.AddProperty("MinStepInterval", true, true, true, true, (double)1e-100, typeof(double));
tmp.AddProperty("NextStepInterval", false, true, false, false, (double)0.001, typeof(double));
tmp.AddProperty("Order", false, true, false, false, 2, typeof(int));
tmp.AddProperty("OriginalStepInterval", true, true, false, false, (double)0.001, typeof(double));
tmp.AddProperty("Priority", true, true, true, true, 0, typeof(int));
tmp.AddProperty("ProcessList", false, true, false, false, "", typeof(List<EcellValue>));
tmp.AddProperty("ReadVariableList", false, true, false, false, "", typeof(List<EcellValue>));
tmp.AddProperty("RngSeed", true, false, true, false, "", typeof(string));
tmp.AddProperty("StateToleranceFactor", true, true, true, true, (double)1.0, typeof(double));
tmp.AddProperty("StepInterval", true, true, true, true, (double)0.001, typeof(double));
tmp.AddProperty("SystemList", false, true, false, false, "", typeof(List<EcellValue>));
tmp.AddProperty("Tolerance", true, true, true, true, (double)1e-6, typeof(double));
tmp.AddProperty("WriteVariableList", false, true, false, false, "", typeof(List<EcellValue>));
this.m_moduleDic.Add(tmp.Name, tmp);
tmp = new DynamicModule("ODE45Stepper", "", false, "ODE45Stepper");
tmp.AddProperty("AbsoluteEpsilon", true, true, true, true, (double)0.1, typeof(double));
tmp.AddProperty("AbsoluteToleranceFactor", true, true, true, true, (double)1.0, typeof(double));
tmp.AddProperty("CurrentTime", false, true, false, false, (double)0.0, typeof(double));
tmp.AddProperty("DependentStepperList", false, true, false, false, "", typeof(List<EcellValue>));
tmp.AddProperty("DerivativeToleranceFactor", true, true, true, true, (double)1.0, typeof(double));
tmp.AddProperty("MaxErrorRatio", false, true, false, false, (double)1.0, typeof(double));
tmp.AddProperty("MaxStepInterval", true, true, true, true, (double)1e+100, typeof(double));
tmp.AddProperty("MinStepInterval", true, true, true, true, (double)1e-100, typeof(double));
tmp.AddProperty("NextStepInterval", false, true, false, false, (double)0.001, typeof(double));
tmp.AddProperty("Order", false, true, false, false, 5, typeof(int));
tmp.AddProperty("OriginalStepInterval", true, true, false, false, (double)0.001, typeof(double));
tmp.AddProperty("Priority", true, true, true, true, 0, typeof(int));
tmp.AddProperty("ProcessList", false, true, false, false, "", typeof(List<EcellValue>));
tmp.AddProperty("ReadVariableList", false, true, false, false, "", typeof(List<EcellValue>));
tmp.AddProperty("RngSeed", true, false, true, false, "", typeof(string));
tmp.AddProperty("SpectralRadius", false, true, false, false, (double)0.0, typeof(double));
tmp.AddProperty("StateToleranceFactor", true, true, true, true, (double)1.0, typeof(double));
tmp.AddProperty("StepInterval", true, true, true, true, (double)0.01, typeof(double));
tmp.AddProperty("SystemList", false, true, false, false, "", typeof(List<EcellValue>));
tmp.AddProperty("Tolerance", true, true, true, true, (double)1e-6, typeof(double));
tmp.AddProperty("WriteVariableList", false, true, false, false, "", typeof(List<EcellValue>));
this.m_moduleDic.Add(tmp.Name, tmp);
tmp = new DynamicModule("ODEStepper", "", false, "ODEStepper");
tmp.AddProperty("AbsoluteEpsilon", true, true, true, true, (double)0.1, typeof(double));
tmp.AddProperty("AbsoluteToleranceFactor", true, true, true, true, (double)1.0, typeof(double));
tmp.AddProperty("CurrentTime", false, true, false, false, (double)0.0, typeof(double));
tmp.AddProperty("DependentStepperList", false, true, false, false, "", typeof(List<EcellValue>));
tmp.AddProperty("DerivativeToleranceFactor", true, true, true, true, (double)1.0, typeof(double));
tmp.AddProperty("IsEpsilonChecked", true, true, true, true, 1, typeof(int));
tmp.AddProperty("JacobianRecalculateTheta", true, true, true, true, (double)0.001, typeof(double));
tmp.AddProperty("MaxErrorRatio", false, true, false, false, (double)1.0, typeof(double));
tmp.AddProperty("MaxStepInterval", true, true, true, true, (double)1e+100, typeof(double));
tmp.AddProperty("MinStepInterval", true, true, true, true, (double)1e-100, typeof(double));
tmp.AddProperty("NextStepInterval", false, true, false, false, (double)0.001, typeof(double));
tmp.AddProperty("Order", false, true, false, false, 1, typeof(int));
tmp.AddProperty("OriginalStepInterval", true, true, false, false, (double)0.001, typeof(double));
tmp.AddProperty("Priority", true, true, true, true, 0, typeof(int));
tmp.AddProperty("ProcessList", false, true, false, false, "", typeof(List<EcellValue>));
tmp.AddProperty("ReadVariableList", false, true, false, false, "", typeof(List<EcellValue>));
tmp.AddProperty("RelativeEpsilon", true, true, true, true, (double)0.1, typeof(double));
tmp.AddProperty("SpectralRadius", false, true, false, false, (double)0.0, typeof(double));
tmp.AddProperty("StateToleranceFactor", true, true, true, true, (double)1.0, typeof(double));
tmp.AddProperty("StepInterval", true, true, true, true, (double)0.01, typeof(double));
tmp.AddProperty("SystemList", false, true, false, false, "", typeof(List<EcellValue>));
// ,�������Ă��Ȃ�
tmp.AddProperty("TolerableStepInterval", true, true, true, true, (double)0.001, typeof(double));
tmp.AddProperty("Tolerance", true, true, true, true, (double)1e-6, typeof(double));
tmp.AddProperty("Uround", true, true, true, true, (double)1e-6, typeof(double));
tmp.AddProperty("WriteVariableList", false, true, false, false, "", typeof(List<EcellValue>));
this.m_moduleDic.Add(tmp.Name, tmp);
// ��������description���Ȃ�����
tmp = new DynamicModule("TauLeapProcess", "", false, "TauLeapProcess");
tmp.AddProperty("Activity", true, true, false, false, (double)0.0, typeof(double));
tmp.AddProperty("IsContinuous", false, true, false, false, 1, typeof(int));
tmp.AddProperty("Name", true, true, true, true, "", typeof(string));
tmp.AddProperty("Priority", true, true, true, true, 0, typeof(int));
tmp.AddProperty("StepperID", true, true, true, true, "", typeof(string));
tmp.AddProperty("VariableReferenceList", true, true, true, true, "", typeof(List<EcellValue>));
tmp.AddProperty("Order", false, true, false, false, 0, typeof(int));
tmp.AddProperty("Propensity", false, true, false, false, (double)0.0, typeof(double));
tmp.AddProperty("k", true, true, true, true, (double)0.0, typeof(double));
this.m_moduleDic.Add(tmp.Name, tmp);
tmp = new DynamicModule("PingPongBiBiFluxProcess", "", false, "PingPongBiBiFluxProcess");
tmp.AddProperty("Activity", true, true, false, false, (double)0.0, typeof(double));
tmp.AddProperty("IsContinuous", false, true, false, false, 1, typeof(int));
tmp.AddProperty("Name", true, true, true, true, "", typeof(string));
tmp.AddProperty("Priority", true, true, true, true, 0, typeof(int));
tmp.AddProperty("StepperID", true, true, true, true, "", typeof(string));
tmp.AddProperty("VariableReferenceList", true, true, true, true, "", typeof(List<EcellValue>));
tmp.AddProperty("KcF", true, true, true, true, (double)0.0, typeof(double));
tmp.AddProperty("KcR", true, true, true, true, (double)0.0, typeof(double));
tmp.AddProperty("Keq", true, true, true, true, (double)1.0, typeof(double));
tmp.AddProperty("KmS0", true, true, true, true, (double)1.0, typeof(double));
tmp.AddProperty("KmS1", true, true, true, true, (double)1.0, typeof(double));
tmp.AddProperty("KmP0", true, true, true, true, (double)1.0, typeof(double));
tmp.AddProperty("KmP1", true, true, true, true, (double)1.0, typeof(double));
tmp.AddProperty("KiS0", true, true, true, true, (double)1.0, typeof(double));
tmp.AddProperty("KiP1", true, true, true, true, (double)1.0, typeof(double));
this.m_moduleDic.Add(tmp.Name, tmp);
tmp = new DynamicModule("ExpressionAssignmentProcess", "", false, "ExpressionAssignmentProcess");
tmp.AddProperty("Activity", true, true, false, false, (double)0.0, typeof(double));
tmp.AddProperty("IsContinuous", false, true, false, false, 1, typeof(int));
tmp.AddProperty("Name", true, true, true, true, "", typeof(string));
tmp.AddProperty("Priority", true, true, true, true, 0, typeof(int));
tmp.AddProperty("StepperID", true, true, true, true, "", typeof(string));
tmp.AddProperty("VariableReferenceList", true, true, true, true, "", typeof(List<EcellValue>));
tmp.AddProperty("Expression", true, true, true, true, "self.getSuperSystem().SizeN_A", typeof(string));
tmp.AddProperty("Variable", true, true, true, true, "", typeof(string));
this.m_moduleDic.Add(tmp.Name, tmp);
tmp = new DynamicModule("TauLeapStepper", "", false, "TauLeapStepper");
tmp.AddProperty("AbsoluteEpsilon", true, true, true, true, (double)0.1, typeof(double));
tmp.AddProperty("AbsoluteToleranceFactor", true, true, true, true, (double)1.0, typeof(double));
tmp.AddProperty("CurrentTime", false, true, false, false, (double)0.0, typeof(double));
tmp.AddProperty("DependentStepperList", false, true, false, false, "", typeof(List<EcellValue>));
tmp.AddProperty("DerivativeToleranceFactor", true, true, true, true, (double)1.0, typeof(double));
tmp.AddProperty("Epsilon", true, true, true, true, (double)0.03, typeof(double));
tmp.AddProperty("MaxErrorRatio", false, true, false, false, (double)1.0, typeof(double));
tmp.AddProperty("MaxStepInterval", true, true, true, true, (double)1e+100, typeof(double));
tmp.AddProperty("MinStepInterval", true, true, true, true, (double)1e-100, typeof(double));
tmp.AddProperty("NextStepInterval", false, true, false, false, (double)0.001, typeof(double));
tmp.AddProperty("Order", false, true, false, false, 1, typeof(int));
tmp.AddProperty("OriginalStepInterval", true, true, false, false, (double)0.001, typeof(double));
tmp.AddProperty("Priority", true, true, true, true, 0, typeof(int));
tmp.AddProperty("ProcessList", false, true, false, false, "", typeof(List<EcellValue>));
tmp.AddProperty("ReadVariableList", false, true, false, false, "", typeof(List<EcellValue>));
tmp.AddProperty("RelativeEpsilon", true, true, true, true, (double)0.1, typeof(double));
tmp.AddProperty("SpectralRadius", false, true, false, false, (double)0.0, typeof(double));
tmp.AddProperty("Stage", false, true, false, false, 1, typeof(int));
tmp.AddProperty("StateToleranceFactor", true, true, true, true, (double)1.0, typeof(double));
tmp.AddProperty("StepInterval", true, true, true, true, (double)0.01, typeof(double));
tmp.AddProperty("SystemList", false, true, false, false, "", typeof(List<EcellValue>));
tmp.AddProperty("Tau", false, true, false, false, Double.PositiveInfinity, typeof(double));
tmp.AddProperty("TolerableStepInterval", true, true, false, false, (double)0.001, typeof(double));
tmp.AddProperty("Tolerance", true, true, true, true, (double)1e-6, typeof(double));
tmp.AddProperty("Uround", true, true, true, true, (double)1e-6, typeof(double));
tmp.AddProperty("WriteVariableList", false, true, false, false, "", typeof(List<EcellValue>));
this.m_moduleDic.Add(tmp.Name, tmp);
}
public void TearDown()
{
_env = null;
_manager = null;
}
public void TearDown()
{
_env = null;
}
/// <summary>
/// Constructor.
/// </summary>
public JobManager(ApplicationEnvironment env)
{
m_env = env;
m_timer = new Timer();
m_timer.Enabled = false;
m_timer.Interval = m_updateInterval;
m_timer.Tick += new EventHandler(UpdateTimeFire);
LocalJobProxy p = new LocalJobProxy();
p.Manager = this;
m_proxyList.Add(p.Name, p);
string cog_home = System.Environment.GetEnvironmentVariable("COG_HOME");
if (!string.IsNullOrEmpty(cog_home))
{
GlobusJobProxy g = new GlobusJobProxy();
g.Manager = this;
m_proxyList.Add(g.Name, g);
}
SetCurrentEnvironment(p.Name);
TmpRootDir = Util.GetTmpDir();
}
public void TestFixtureSetUp()
{
_env = new ApplicationEnvironment();
_unitUnderTest = _env.DataManager;
}
/// <summary>
/// Creates the stepper stub with the current simulation parameter and the stepper ID.
/// </summary>
/// <param name="cManager">CommandManager</param>
/// <param name="ID">Job ID.</param>
public StepperStub(CommandManager cManager, string ID)
{
this.m_cManager = cManager;
this.m_env = cManager.Environment;
this.m_ID = ID;
}
/// <summary>
/// Compile the source of DM.
/// </summary>
/// <param name="env">Application Environmant object.</param>
/// <param name="showDialog">ShowDialog or not.</param>
private void Compile(ApplicationEnvironment env, bool showDialog)
{
// Check error.
if (m_sourceFile == null || !File.Exists(m_sourceFile))
return;
string stageHome = System.Environment.GetEnvironmentVariable("ECELL_STAGING_HOME");
if (string.IsNullOrEmpty(stageHome) )
{
string errmes = string.Format(MessageResources.ErrNotInstall, "E-Cell SDK");
throw new EcellException(errmes);
}
// Set up compile environment.
string VS90 = System.Environment.GetEnvironmentVariable("VS90COMNTOOLS");
if (string.IsNullOrEmpty(VS90))
{
string errmes = string.Format(MessageResources.ErrNotInstall, "Visual Studio 2008");
throw new EcellException(errmes);
}
string VSPATH = VS90;
string groupname = Constants.groupCompile + ":" + m_sourceFile;
int maxCount = 10;
int count = 0;
ReportingSession rs = null;
while (rs == null)
{
try
{
rs = env.ReportManager.GetReportingSession(groupname);
}
catch (Exception)
{
string errmes = string.Format(MessageResources.ErrCompile, m_sourceFile);
System.Threading.Thread.Sleep(100);
if (maxCount < count)
{
throw new EcellException(errmes);
}
count++;
}
}
// Compile
using (rs)
{
ProcessStartInfo psi = new ProcessStartInfo();
psi.FileName = "cmd.exe";
psi.UseShellExecute = false;
psi.CreateNoWindow = true;
psi.WorkingDirectory = Path.GetDirectoryName(m_sourceFile);
psi.RedirectStandardError = true;
psi.RedirectStandardOutput = true;
psi.RedirectStandardInput = true;
string arch1 = "Win32";
string arch2 = "X86";
string arch3 = "x86";
if (IntPtr.Size == 8)
{
arch1 = "X64";
arch2 = "X64";
arch3 = "amd64";
}
Process p = Process.Start(psi);
p.StandardInput.WriteLine("call \"" + VSPATH + "..\\..\\VC\\vcvarsall.bat\" " + arch3);
// Set INCLUDE path
string INCLUDEPATH = "";
string path1 = Path.Combine(stageHome, "include");
string path2 = string.Format("{0}\\{1}\\Release\\include", stageHome, arch1);
if (Directory.Exists(path1))
INCLUDEPATH = path1;
else if (Directory.Exists(path2))
INCLUDEPATH = path2;
else
throw new EcellException(string.Format("Can not find INCLUDE path, {0}, {1}", path1, path2));
// Set LIB path
string LIBPATH = "";
string libpath1 = Path.Combine(stageHome, "lib");
string libpath2 = string.Format("{0}\\{1}\\Release\\lib", stageHome, arch1);
if (Directory.Exists(libpath1))
LIBPATH = libpath1;
else if (Directory.Exists(libpath2))
LIBPATH = libpath2;
else
throw new EcellException(string.Format("Can not find LIB path, {0}, {1}", path1, path2));
// construct compile option.
string opt = "cl.exe /O2 /GL /I \"{0}\" /I \"{0}\\ecell-3.2\" /I \"{0}\\ecell-3.2\\libecs\" /I \"{0}\\ecell-3.2\\libemc\" /D \"WIN32\" /D\"NODEBUG\" /D \"_WINDOWS\" /D \"_USRDLL\" /D \"GSL_DLL\" /D \"__STDC__=1\" /D \"_WINDLL\" /D \"_WIN32_WINNT=0x500\" /D \"_SECURE_SCL=0\" /D \"_MBCS\" /FD /EHsc /MD /W3 /nologo /Wp64 /Zi /TP /errorReport:prompt \"{1}\" /link /OUT:\"{2}\" /LIBPATH:\"{5}\" /INCREMENTAL:NO /NOLOGO /DLL /MANIFEST /MANIFESTFILE:\"{2}.intermediate.manifest \" /DEBUG /SUBSYSTEM:WINDOWS /OPT:REF /OPT:ICF /LTCG /MACHINE:{4} ecs.lib kernel32.lib user32.lib gdi32.lib winspool.lib comdlg32.lib advapi32.lib shell32.lib ole32.lib oleaut32.lib uuid.lib odbc32.lib odbccp32.lib";
string cmd = string.Format(opt, new object[] {
INCLUDEPATH, m_sourceFile, m_outputFile, arch1, arch2, LIBPATH });
// Compile.
p.StandardInput.WriteLine(cmd);
p.StandardInput.WriteLine("exit");
p.StandardInput.Close();
string mes = p.StandardOutput.ReadToEnd();
env.Console.Write(mes);
p.StandardOutput.Close();
p.WaitForExit();
p.Close();
// Check Error.
if (mes.Contains(" error"))
{
string[] ele = mes.Split(new char[] { '\n' });
for (int i = 0; i < ele.Length; i++)
{
if (ele[i].Contains(" error"))
{
rs.Add(new CompileReport(MessageType.Error, ele[i], groupname));
env.LogManager.Append(new ApplicationLogEntry(MessageType.Error, ele[i], this));
}
}
string errmes = string.Format(MessageResources.ErrCompile, m_sourceFile);
throw new EcellException(errmes);
}
p = Process.Start(psi);
p.StandardInput.WriteLine("call \"" + VSPATH + "\\vsvars32.bat\"");
string mopt = "mt.exe /outputresource:\"{0};#2\" /manifest \"{0}.intermediate.manifest\" /nologo";
cmd = string.Format(mopt, m_outputFile);
p.StandardInput.WriteLine(cmd);
p.StandardInput.WriteLine("exit");
p.StandardInput.Close();
mes = p.StandardOutput.ReadToEnd();
env.Console.WriteLine(mes);
Console.WriteLine(mes);
p.StandardOutput.Close();
p.WaitForExit();
p.Close();
// error
if (mes.Contains(" error"))
{
string[] ele = mes.Split(new char[] { '\n' });
for (int i = 0; i < ele.Length; i++)
{
if (ele[i].Contains(" error"))
{
rs.Add(new CompileReport(MessageType.Error, ele[i], groupname));
env.LogManager.Append(new ApplicationLogEntry(MessageType.Error, ele[i], this));
}
}
string errmes = string.Format(MessageResources.ErrCompile, m_sourceFile);
throw new EcellException(errmes);
}
// Reload DMs.
try
{
File.Copy(OutputFile, DMFile, true);
string msg = string.Format(MessageResources.InfoCompile,
Path.GetFileNameWithoutExtension(DMFile));
env.Console.WriteLine(msg);
env.Console.Flush();
}
catch (Exception e)
{
// �ړ����DM�����[�h����Ă��邽�߈ړ��ł��Ȃ������B
// ����Ă��̗�O�͖��������̂Ƃ���B
string errmsg = string.Format(MessageResources.WarnMoveDM, DMFile, OutputFile);
if (showDialog)
{
Util.ShowNoticeDialog(errmsg);
}
env.Console.WriteLine(e.ToString());
env.Console.Flush();
}
}
}
/// <summary>
/// Set the plugin settings.
/// </summary>
/// <param name="env">the application environment.</param>
/// <param name="settings">XMLNode.</param>
private static void SetPluginSettings(ApplicationEnvironment env, XmlNode settings)
{
if (settings == null)
return;
foreach (XmlElement plugin in settings.ChildNodes)
{
env.PluginManager.SetPluginStatus(plugin.Name, plugin);
}
}
/// <summary>
/// Set the logger to XML node.
/// </summary>
/// <param name="env">ApplicationEnvironment</param>
/// <param name="model">the model object.</param>
/// <param name="loggers">Logger XML node.</param>
private static void SetLogger(ApplicationEnvironment env, EcellModel model, XmlNode loggers)
{
if (loggers == null || loggers.ChildNodes.Count <= 0)
return;
foreach (XmlNode node in loggers.ChildNodes)
{
if (!node.Name.Equals(LemlConstants.xPathLogger))
continue;
string modelID = GetStringAttribute(node, LemlConstants.xPathModelID);
string key = GetStringAttribute(node, LemlConstants.xPathKey);
string type = GetStringAttribute(node, LemlConstants.xPathType);
EcellObject eo = GetEcellObject(model, type, key);
if (eo == null)
continue;
string fullPN = GetStringAttribute(node, LemlConstants.xpathFullPN);
LoggerEntry entry = new LoggerEntry(modelID, key, type, fullPN);
entry.Color = Color.FromName(GetStringAttribute(node, LemlConstants.xpathColor));
entry.LineStyleInt = Int32.Parse(GetStringAttribute(node, LemlConstants.xpathLineStyle));
entry.LineWidth = Int32.Parse(GetStringAttribute(node, LemlConstants.xpathLineWidth));
entry.IsShowInt = Int32.Parse(GetStringAttribute(node, LemlConstants.xpathIsShown));
entry.IsY2AxisInt = Int32.Parse(GetStringAttribute(node, LemlConstants.xpathIsY2));
foreach (EcellData d in eo.Value)
{
if (!d.EntityPath.Equals(fullPN))
continue;
d.Logged = true;
env.LoggerManager.AddLoggerEntry(entry);
}
}
}
/// <summary>
/// Save EcellObjects in LEML format.
/// </summary>
/// <param name="env">ApplicationEnvironment</param>
/// <param name="model">The model object.</param>
/// <param name="filename">the file name.</param>
public static void SaveLEML(ApplicationEnvironment env, EcellModel model, string filename)
{
CheckFilePath(filename);
FileStream fs = null;
XmlTextWriter xmlOut = null;
try
{
// Create xml file
fs = new FileStream(filename, FileMode.Create);
xmlOut = new XmlTextWriter(fs, Encoding.UTF8);
// Use indenting for readability
xmlOut.Formatting = Formatting.Indented;
xmlOut.WriteStartDocument();
// Always begin file with identification and warning
xmlOut.WriteComment(LemlConstants.xPathFileHeader1);
xmlOut.WriteComment(LemlConstants.xPathFileHeader2);
// Application settings
xmlOut.WriteStartElement(LemlConstants.xPathApplication);
xmlOut.WriteAttributeString(LemlConstants.xPathName, Application.ProductName);
xmlOut.WriteAttributeString(LemlConstants.xPathApplicationVersion, Application.ProductVersion);
xmlOut.WriteAttributeString(LemlConstants.xPathConfigFileVersion, CONFIG_FILE_VERSION);
// Layer settings
xmlOut.WriteStartElement(LemlConstants.xPathLayerList);
foreach (EcellLayer layer in model.Layers)
{
xmlOut.WriteStartElement(LemlConstants.xPathLayer);
xmlOut.WriteAttributeString(LemlConstants.xPathName, layer.Name);
xmlOut.WriteAttributeString(LemlConstants.xPathVisible, layer.Visible.ToString());
xmlOut.WriteEndElement();
}
xmlOut.WriteEndElement();
// Alias
xmlOut.WriteStartElement(LemlConstants.xPathAliasList);
foreach (EcellObject eo in model.Children)
{
foreach (EcellObject child in eo.Children)
{
if (!(child is EcellVariable))
continue;
WriteAliases(xmlOut, child);
}
}
xmlOut.WriteEndElement();
// Object settings
xmlOut.WriteStartElement(LemlConstants.xPathEcellObjectList);
foreach (EcellObject stepper in model.Steppers)
{
WriteObjectElement(xmlOut, stepper);
}
foreach (EcellObject eo in model.Children)
{
WriteObjectElement(xmlOut, eo);
foreach (EcellObject child in eo.Children)
{
WriteObjectElement(xmlOut, child);
}
}
xmlOut.WriteEndElement();
// Logger
xmlOut.WriteStartElement(LemlConstants.xPathLoggerList);
foreach (string name in env.LoggerManager.GetLoggerList())
{
LoggerEntry entry = env.LoggerManager.GetLoggerEntryForFullPN(name);
WriteLoggerElement(xmlOut, entry);
}
xmlOut.WriteEndElement();
// Plugin settings.
xmlOut.WriteStartElement(LemlConstants.xPathPluginSettings);
foreach (XmlNode status in env.PluginManager.GetPluginStatus())
{
status.WriteTo(xmlOut);
}
xmlOut.WriteEndElement();
xmlOut.WriteEndElement();
xmlOut.WriteEndDocument();
}
catch (Exception ex)
{
Trace.WriteLine(ex);
Util.ShowErrorDialog(string.Format(MessageResources.ErrSaveFile, filename) + Environment.NewLine + ex.Message);
}
finally
{
if (xmlOut != null) xmlOut.Close();
if (fs != null) fs.Close();
}
}
/// <summary>
/// LoadLEML
/// </summary>
/// <param name="env">ApplicationEnvironment.</param>
/// <param name="model">the model ID.</param>
/// <param name="filename">the filename.</param>
public static void LoadLEML(ApplicationEnvironment env, EcellModel model,string filename)
{
if (!File.Exists(filename))
return;
XmlDocument xmlD = new XmlDocument();
try
{
xmlD.Load(filename);
XmlNode applicationData = GetNodeByKey(xmlD, LemlConstants.xPathApplication);
// Load Layers
XmlNode layers = GetNodeByKey(applicationData, LemlConstants.xPathLayerList);
SetLayers(model, layers);
// Load Aliases
XmlNode aliases = GetNodeByKey(applicationData, LemlConstants.xPathAliasList);
SetAliases(model, aliases);
// Load EcellObjects
XmlNode ecellObjects = GetNodeByKey(applicationData, LemlConstants.xPathEcellObjectList);
SetEcellObjects(model, ecellObjects);
// Load Logger
XmlNode loggers = GetNodeByKey(applicationData, LemlConstants.xPathLoggerList);
SetLogger(env, model, loggers);
// Load plugin settings
XmlNode settings = GetNodeByKey(applicationData, LemlConstants.xPathPluginSettings);
SetPluginSettings(env, settings);
}
catch (Exception ex)
{
Trace.WriteLine(ex);
Util.ShowErrorDialog(string.Format(MessageResources.ErrLoadFile, filename) + Environment.NewLine + ex.Message);
}
}
public void SetUp()
{
_env = new ApplicationEnvironment();
_unitUnderTest = new ConsoleManager(_env);
}
/// <summary>
/// Comile the source of DM.
/// </summary>
/// <param name="fileName">the file name of source.</param>
/// <param name="env">Application Environment object.</param>
public static void Compile(string fileName, ApplicationEnvironment env)
{
if (fileName == null || !File.Exists(fileName))
return;
DMCompiler cm = new DMCompiler();
cm.SourceFile = fileName;
string outdir = Path.Combine(Path.GetDirectoryName(fileName), Constants.TmpDirName);
if (!Directory.Exists(outdir))
Directory.CreateDirectory(outdir);
string outfile = Path.Combine(outdir, Path.GetFileNameWithoutExtension(fileName) + Constants.FileExtDM);
string dmfile = Path.Combine(Path.GetDirectoryName(fileName), Path.GetFileNameWithoutExtension(fileName) + Constants.FileExtDM);
cm.OutputFile = outfile;
cm.DMFile = dmfile;
try
{
env.DataManager.CurrentProject.UnloadSimulator();
cm.Compile(env, true);
string msg = string.Format(MessageResources.InfoCompile,
Path.GetFileNameWithoutExtension(dmfile));
env.DMDescriptorKeeper.Load(env.DataManager.CurrentProject.GetDMDirs());
env.DataManager.CurrentProject.ReloadSimulator();
Util.ShowNoticeDialog(msg);
}
catch (Exception e)
{
env.Console.WriteLine(e.ToString());
env.Console.Flush();
Util.ShowErrorDialog(e.Message);
}
}
/// <summary>
/// Compile DMs.
/// </summary>
/// <param name="files">source files.</param>
/// <param name="env">Application Environment</param>
public static void Compile(List<string> files, ApplicationEnvironment env)
{
if (files == null || files.Count == 0)
return;
DMCompiler cm = new DMCompiler();
string errmes = "";
string finished = "";
try
{
env.DataManager.CurrentProject.UnloadSimulator();
}
catch (Exception e)
{
env.Console.WriteLine(e.ToString());
env.Console.Flush();
Util.ShowErrorDialog(e.Message);
}
foreach (string filename in files)
{
cm.SourceFile = filename;
string outdir = Path.Combine(Path.GetDirectoryName(filename), Constants.TmpDirName);
if (!Directory.Exists(outdir))
Directory.CreateDirectory(outdir);
string dmname = Path.GetFileNameWithoutExtension(filename);
string outfile = Path.Combine(outdir, dmname + Constants.FileExtDM);
string dmfile = Path.Combine(Path.GetDirectoryName(filename), dmname + Constants.FileExtDM);
cm.OutputFile = outfile;
cm.DMFile = dmfile;
try
{
cm.Compile(env, true);
finished += " " + dmname;
}
catch (Exception e)
{
errmes += e.Message + "\n";
env.Console.WriteLine(e.ToString());
env.Console.Flush();
}
}
env.DMDescriptorKeeper.Load(env.DataManager.CurrentProject.GetDMDirs());
env.DataManager.CurrentProject.ReloadSimulator();
// Error
if (!string.IsNullOrEmpty(errmes))
{
Util.ShowErrorDialog(errmes);
}
// Finished
if (!string.IsNullOrEmpty(finished))
{
string msg = string.Format(MessageResources.InfoCompile,
Path.GetFileNameWithoutExtension(finished));
Util.ShowNoticeDialog(msg);
}
}
/// <summary>
/// Constructors.
/// </summary>
/// <param name="env">application environment.</param>
public ConsoleManager(ApplicationEnvironment env)
{
m_env = env;
m_buf = new StringBuilder();
m_state = 0;
}
/// <summary>
/// Creates the new "DataManager" instance with no argument.
/// </summary>
public DataManager(ApplicationEnvironment env)
{
this.m_env = env;
this.m_observedList = new Dictionary<string, EcellObservedData>();
this.m_parameterList = new Dictionary<string, EcellParameterData>();
SetDefaultDir();
}
public void SetUp()
{
_unitUnderTest = new ApplicationEnvironment();
}
/// <summary>
/// Constructor with the initial parameters.
/// </summary>
/// <param name="env">the environment object.</param>
public CommandManager(ApplicationEnvironment env)
{
m_env = env;
s_instance = this;
}
public void TearDown()
{
_unitUnderTest = null;
}
public void TestFixtureTearDown()
{
_unitUnderTest = null;
_env = null;
}
public void SetUp()
{
_env = new ApplicationEnvironment();
_manager = _env.ActionManager;
}
/// <summary>
/// Creates the new "Project" instance with ProjectInfo.
/// </summary>
/// <param name="info">the project information object.</param>
/// <param name="env">ApplicationEnvironment</param>
public Project(ProjectInfo info, ApplicationEnvironment env)
{
if (info == null)
throw new EcellException(string.Format(MessageResources.ErrInvalidParam, "ProjectInfo"));
if (env == null)
throw new EcellException(string.Format(MessageResources.ErrInvalidParam, "ApplicationEnvironment"));
m_info = info;
m_env = env;
m_stepperDic = new Dictionary<string, List<EcellObject>>();
m_modelList = new List<EcellModel>();
m_systemDic = new Dictionary<string, List<EcellObject>>();
m_logableEntityPathDic = new Dictionary<string, string>();
m_loggerPolicyDic = new Dictionary<string, LoggerPolicy>();
// Loads the model.
if (info.Type != ProjectType.Model)
info.FindModels();
SetDMList();
m_simulator = CreateSimulatorInstance();
//
Lock();
}
public void SetUp()
{
_env = new ApplicationEnvironment();
}
