/// <summary>
/// [ RuleStruct ]
/// [[ RuleType, Formula, Variable ]]
/// </summary>
/// <param name="aSBMLmodel"></param>
/// <returns></returns>
public static List<RuleStruct> getRule(Model aSBMLmodel)
{
List<RuleStruct> list = new List<RuleStruct>();
ListOfRules rules = aSBMLmodel.getListOfRules();
for (int i = 0; i < rules.size(); i++ )
{
Rule aRule = aSBMLmodel.getRule(i);
int aRuleType = aRule.getTypeCode();
string aFormula = aRule.getFormula();
string aVariable = null;
if ( aRuleType == libsbml.libsbml.SBML_ALGEBRAIC_RULE )
aVariable = "";
else if (aRuleType == libsbml.libsbml.SBML_ASSIGNMENT_RULE ||
aRuleType == libsbml.libsbml.SBML_RATE_RULE)
aVariable = aRule.getVariable();
//else if (aRuleType == libsbml.libsbml.SBML_SPECIES_CONCENTRATION_RULE)
// aVariable = aRule.getSpecies();
//else if (aRuleType == libsbml.libsbml.SBML_COMPARTMENT_VOLUME_RULE)
// aVariable = aRule.getCompartment();
// ToDo: LibSBML3.2C#で呼び出せない。どうするか検討する。
else if (aRuleType == libsbml.libsbml.SBML_PARAMETER_RULE)
aVariable = aRule.getName();
else
throw new EcellException(" The type of Rule must be Algebraic, Assignment or Rate Rule");
RuleStruct rule = new RuleStruct(
aRuleType,
aFormula,
aVariable );
list.Add(rule);
}
return list;
}
public void TestConstructorOfStructs()
{
//
CompartmentStruct c = new CompartmentStruct(
"ID",
"Name",
0,
0.0,
0.0,
"Unit",
"Parent",
false);
//
EventStruct e = new EventStruct(
"ID",
"Name",
"Trigger",
"delay",
"TimeUnit",
new List<EventAssignmentStruct>());
//
EventAssignmentStruct ea = new EventAssignmentStruct(
"Variable",
"Formula");
//
FunctionDefinitionStruct fd = new FunctionDefinitionStruct(
"ID",
"Name",
"Formula");
//
ParameterStruct p = new ParameterStruct(
"ID",
"Name",
0.0,
"Unit",
false);
//
ReactionStruct r = new ReactionStruct(
"ID",
"Name",
new List<KineticLawStruct>(),
false,
false,
new List<ReactantStruct>(),
new List<ProductStruct>(),
new List<string>());
//
KineticLawStruct k = new KineticLawStruct(
"Formula",
new List<string>(),
"TimeUnit",
"Substance",
new List<ParameterStruct>(),
null);
//
ReactantStruct rs = new ReactantStruct(
"Species",
0,
"Formula",
0);
//
ProductStruct ps = new ProductStruct(
"Species",
0.0,
"Formula",
0);
//
RuleStruct rule = new RuleStruct(
0,
"Formula",
"Variable");
//
SpeciesStruct s = new SpeciesStruct(
"ID",
"Name",
"Parent",
0.0,
0.0,
"Substance",
"Spatial",
"Unit",
false,
false,
0,
false);
//
UnitDefinitionStruct ud = new UnitDefinitionStruct(
"ID",
"Name",
new List<UnitStruct>());
//
UnitStruct u = new UnitStruct(
"Kind",
0,
0,
0.0,
0.0);
//
VariableReferenceStruct v = new VariableReferenceStruct(
"Name",
"Variable",
0);
//
InitialAssignmentStruct i = new InitialAssignmentStruct(
"Name",
0.0);
}