public void outputToText_xcaliburData_Test1()
{
var exportedFile = exportedMSFeaturesToTextFileFromOrbitrapFile1;
if (File.Exists(exportedFile))
{
File.Delete(exportedFile);
}
//create run and get some results
var run = TestDataCreationUtilities.CreateResultsFromThreeScansOfStandardOrbitrapData();
var isosExporter = new DeconTools.Backend.FileIO.MSFeatureToTextFileExporterBasic(exportedFile);
isosExporter.ExportResults(run.ResultCollection.ResultList);
Assert.AreEqual(true, File.Exists(exportedFile));
var importer = new IsosImporter(exportedFile, run.MSFileType);
var results = importer.Import();
Assert.IsTrue(results != null);
Assert.IsTrue(results.Count > 300);
//TODO: need to check if '388' is good or not
//Assert.AreEqual(388, results.Count);
}
public static ExporterBase <IsosResult> CreateMSFeatureExporter(Globals.ExporterType exporterType, Globals.MSFileType msFileType, string outputFileName)
{
Check.Assert(!string.IsNullOrEmpty(outputFileName), "MSFeatureExporterFactory cannot work. OutputFileName is empty - which is bad.");
ExporterBase <IsosResult> msFeatureExporter;
switch (exporterType)
{
case Globals.ExporterType.Text:
//IMS and UIMF filetypes have their own special export formats. All others will use a standard format.
switch (msFileType)
{
case Globals.MSFileType.PNNL_IMS:
msFeatureExporter = new MSFeatureToTextFileExporterIMF(outputFileName);
break;
case Globals.MSFileType.PNNL_UIMF:
msFeatureExporter = new MSFeatureToTextFileExporterUIMF(outputFileName);
break;
default:
msFeatureExporter = new MSFeatureToTextFileExporterBasic(outputFileName);
break;
}
break;
case Globals.ExporterType.Sqlite:
switch (msFileType)
{
case Globals.MSFileType.PNNL_UIMF:
msFeatureExporter = new MSFeatureToSQLiteExporterUIMF(outputFileName);
break;
default:
msFeatureExporter = new MSFeatureToSQLiteExporterBasic(outputFileName);
break;
}
break;
default:
throw new NotImplementedException();
//break;
}
return(msFeatureExporter);
}
