private bool massTagListContainsMassTag(List <TargetBase> filteredList, TargetBase targetMassTag)
{
foreach (var mt in filteredList)
{
if (mt.ID == targetMassTag.ID && mt.ChargeState == targetMassTag.ChargeState)
{
return(true);
}
}
return(false);
}
protected TargetBase(TargetBase copiedTarget)
{
ChargeState = copiedTarget.ChargeState;
Code = copiedTarget.Code;
ElutionTimeUnit = copiedTarget.ElutionTimeUnit;
EmpiricalFormula = copiedTarget.EmpiricalFormula;
ID = copiedTarget.ID;
IsotopicProfile = copiedTarget.IsotopicProfile?.CloneIsotopicProfile();
IsotopicProfileLabeled = copiedTarget.IsotopicProfileLabeled?.CloneIsotopicProfile();
MZ = copiedTarget.MZ;
ModCount = copiedTarget.ModCount;
ModDescription = copiedTarget.ModDescription;
MonoIsotopicMass = copiedTarget.MonoIsotopicMass;
NormalizedElutionTime = copiedTarget.NormalizedElutionTime;
ObsCount = copiedTarget.ObsCount;
ScanLCTarget = copiedTarget.ScanLCTarget;
MsLevel = copiedTarget.MsLevel;
}
public TargetedResultBase CreateMassTagResult(TargetBase massTag)
{
TargetedResultBase result;
switch (ResultType)
{
case Globals.ResultType.BASIC_TARGETED_RESULT:
result = new MassTagResult(massTag);
break;
case Globals.ResultType.N14N15_TARGETED_RESULT:
result = new N14N15_TResult(massTag);
break;
case Globals.ResultType.O16O18_TARGETED_RESULT:
result = new O16O18TargetedResultObject(massTag);
break;
case Globals.ResultType.SIPPER_TARGETED_RESULT:
result = new SipperLcmsTargetedResult(massTag);
break;
case Globals.ResultType.TOPDOWN_TARGETED_RESULT:
result = new TopDownTargetedResult(massTag);
break;
case Globals.ResultType.DEUTERATED_TARGETED_RESULT:
result = new DeuteratedTargetedResultObject(massTag);
break;
default:
result = new MassTagResult(massTag);
break;
}
this.MassTagResultList.Add(massTag, result);
result.MSFeatureID = MSFeatureCounter;
result.Score = 1;
result.Run = this.Run;
this.MSFeatureCounter++;
return(result);
}
public TargetedResultBase GetTargetedResult(TargetBase target)
{
if (target == null)
{
throw new NullReferenceException("Tried to get the TargetResult, but Target is null");
}
if (MassTagResultList.ContainsKey(target))
{
CurrentTargetedResult = MassTagResultList[target];
return(CurrentTargetedResult);
}
else
{
var result = CreateMassTagResult(target); // this creates the appropriate type and adds it to the MassTagResultList and increments the MSFeatureID number
CurrentTargetedResult = result;
return(result);
}
}
protected TargetedResultBase(TargetBase target)
{
this.Target = target;
this.IsotopicProfile = new IsotopicProfile();
this.ChromPeakQualityList = new List <ChromPeakQualityData>();
}
public MassTagResult(TargetBase target) : base(target)
{
}
public N14N15_TResult(TargetBase target) : base(target)
{
}