public void Create(Run run, bool sumAllScans = true, bool processMSMS = true)
{
ScanSetList = new List <ScanSet>();
var minScan = GetMinScan(run);
var maxScan = GetMaxScan(run);
if (sumAllScans)
{
//find first MS1 scan
var firstMS1Scan = -1;
for (var i = minScan; i <= maxScan; i++)
{
if (run.GetMSLevel(i) == 1)
{
firstMS1Scan = i;
break;
}
}
if (firstMS1Scan == -1) //never found a single MS1 scan in the whole dataset
{
}
else
{
var scanSetFactory = new ScanSetFactory();
var scanset = scanSetFactory.CreateScanSet(run, firstMS1Scan, minScan, maxScan);
ScanSetList.Add(scanset);
}
}
else
{
for (var i = minScan; i <= maxScan; i++)
{
var mslevel = run.GetMSLevel(i);
if (mslevel == 1 || processMSMS)
{
ScanSetList.Add(new ScanSet(i));
}
}
}
}