public Data_line_class Deep_copy()
{
Data_line_class copy = (Data_line_class)this.MemberwiseClone();
copy.NCBI_official_symbol = (string)this.NCBI_official_symbol.Clone();
copy.Columns = Deep_copy_columns();
return(copy);
}
public void Order_columns_in_standard_way()
{
int[] old_new_index = ColChar.Order_columns_in_standard_way_and_get_old_new_index_array();
int data_length = Data.Length;
int columns_length = ColChar.Columns_length;
Data_line_class[] ordered_data = new Data_line_class[data_length];
Data_line_class data_line;
for (int indexD = 0; indexD < data_length; indexD++)
{
data_line = Data[indexD];
data_line.Rearrange_columns(old_new_index);
}
ColChar.Column_rearrangements_adopted = true;
}
public void Sum_values_to_this_in_consideration_of_empty_entry(Data_line_class other)
{
int columns_length = Columns_length;
for (int indexC = 0; indexC < columns_length; indexC++)
{
if ((this.Columns[indexC] != Empty_entry) &&
(other.Columns[indexC] != Empty_entry))
{
this.Columns[indexC] += other.Columns[indexC];
}
else if (other.Columns[indexC] != Empty_entry)
{
this.Columns[indexC] = other.Columns[indexC];
}
}
}
public void Add_to_data_instance(IAdd_to_data[] add_data)
{
int old_columns_length = ColChar.Columns_length;
int add_data_length = add_data.Length;
IAdd_to_data add_data_interface_line;
#region Analyze, if new columns needed and add to colChar
add_data = add_data.OrderBy(l => l.EntryType_for_data).ThenBy(l => l.Timepoint_for_data).ThenBy(l => l.SampleName_for_data).ToArray();
List <Colchar_column_line_class> colChar_column_list = new List <Colchar_column_line_class>();
Colchar_column_line_class colChar_column_line;
for (int indexAdd = 0; indexAdd < add_data_length; indexAdd++)
{
add_data_interface_line = add_data[indexAdd];
if ((indexAdd == 0) ||
(!add_data_interface_line.EntryType_for_data.Equals(add_data[indexAdd - 1].EntryType_for_data)) ||
(!add_data_interface_line.Timepoint_for_data.Equals(add_data[indexAdd - 1].Timepoint_for_data)) ||
(!add_data_interface_line.SampleName_for_data.Equals(add_data[indexAdd - 1].SampleName_for_data)))
{
colChar_column_line = new Colchar_column_line_class();
colChar_column_line.EntryType = add_data_interface_line.EntryType_for_data;
colChar_column_line.Timepoint = add_data_interface_line.Timepoint_for_data;
colChar_column_line.SampleName = (string)add_data_interface_line.SampleName_for_data.Clone();
colChar_column_list.Add(colChar_column_line);
}
}
ColChar.Identify_new_columns_and_add_at_right_site(colChar_column_list.ToArray());
int new_columns_length = ColChar.Columns.Length;
#endregion
int data_length = this.Data_length;
Data_line_class data_line;
#region Extend data lines by adding zero values at right site
float[] new_columns;
for (int indexD = 0; indexD < data_length; indexD++)
{
data_line = this.Data[indexD];
new_columns = new float[new_columns_length];
for (int indexOld = 0; indexOld < old_columns_length; indexOld++)
{
new_columns[indexOld] = data_line.Columns[indexOld];
}
data_line.Columns = new_columns.ToArray();
}
#endregion
#region Add to data and generate ordered data add lines to data
add_data = add_data.OrderBy(l => l.NCBI_official_symbol_for_data).ThenBy(l => l.EntryType_for_data).ThenBy(l => l.SampleName_for_data).ToArray();
int indexColumn;
int indexData = 0;
int stringCompare;
Data_line_class new_data_line;
List <Data_line_class> add_lines_to_data_list = new List <Data_line_class>();
int indexCol = -1;
for (int indexAdd = 0; indexAdd < add_data_length; indexAdd++)
{
add_data_interface_line = add_data[indexAdd];
indexColumn = ColChar.Get_columnIndex(add_data_interface_line);
stringCompare = -2;
while ((indexData < data_length) && (stringCompare < 0))
{
data_line = Data[indexData];
stringCompare = data_line.NCBI_official_symbol.CompareTo(add_data_interface_line.NCBI_official_symbol_for_data);
if (stringCompare < 0)
{
indexData++;
}
else if (stringCompare == 0)
{
indexCol = ColChar.Get_columnIndex(add_data_interface_line);
data_line.Add_to_this_line_after_checking_if_this_line_has_empty_entry(add_data_interface_line, indexCol);
}
}
if (stringCompare != 0)
{
new_data_line = new Data_line_class(add_data_interface_line.NCBI_official_symbol_for_data, new_columns_length);
new_data_line.Columns[indexColumn] = add_data_interface_line.Value_for_data;
add_lines_to_data_list.Add(new_data_line);
}
}
Data_line_class[] add_lines_to_data = add_lines_to_data_list.OrderBy(l => l.NCBI_official_symbol).ToArray();
#endregion
#region Combine add_lines_to_data to generate final add_data_lines
int add_lines_length = add_lines_to_data.Length;
int firstIndex_same_rowName = -1;
Data_line_class add_data_line;
Data_line_class inner_add_data_line;
List <Data_line_class> final_add_data_list = new List <Data_line_class>();
for (int indexAL = 0; indexAL < add_lines_length; indexAL++)
{
add_data_line = add_lines_to_data[indexAL];
if ((indexAL == 0) || (!add_data_line.NCBI_official_symbol.Equals(add_lines_to_data[indexAL - 1].NCBI_official_symbol)))
{
firstIndex_same_rowName = indexAL;
}
if ((indexAL == add_lines_length - 1) || (!add_data_line.NCBI_official_symbol.Equals(add_lines_to_data[indexAL + 1].NCBI_official_symbol)))
{
for (int indexInner = firstIndex_same_rowName; indexInner < indexAL; indexInner++)
{
inner_add_data_line = add_lines_to_data[indexInner];
add_data_line.Sum_values_to_this_in_consideration_of_empty_entry(inner_add_data_line);
}
final_add_data_list.Add(add_data_line);
}
}
#endregion
#region Add final data line to data
int final_data_length = final_add_data_list.Count;
int new_data_length = final_data_length + data_length;
Data_line_class[] new_data = new Data_line_class[new_data_length];
int indexNew = -1;
for (int indexOld = 0; indexOld < data_length; indexOld++)
{
indexNew++;
new_data[indexNew] = Data[indexOld];
}
for (int indexFinal = 0; indexFinal < final_data_length; indexFinal++)
{
indexNew++;
new_data[indexNew] = final_add_data_list[indexFinal];
}
Data = new_data;
#endregion
Keep_only_lines_that_contain_at_least_one_non_zero_value();
}
public Data_class()
{
ColChar = new Colchar_class();
Data = new Data_line_class[0];
}