|
public Parse ( string args, |
||
| args | string | |
| standardWriter | ||
| errorWriter | ||
| Результат | ParsingResult |
|
public static int Main(string[] args)
{
var modeParser = new MainParser(CanvasVersionInfo.VersionString, CanvasVersionInfo.CopyrightString,
new GermlineWgsModeParser("Germline-WGS", "CNV calling of a germline sample from whole genome sequencing data"),
new SomaticEnrichmentModeParser("Somatic-Enrichment", "CNV calling of a somatic sample from targeted sequencing data"),
new TumorNormalWgsModeParser("Somatic-WGS", "CNV calling of a somatic sample from whole genome sequencing data"),
new TumorNormalEnrichmentModeParser("Tumor-normal-enrichment", "CNV calling of a tumor/normal pair from targeted sequencing data"));
var result = modeParser.Parse(args, Console.Out, Console.Error);
if (!result.Success)
return -1;
return result.Result.Launch();
}
public void Parse_NoArguments_DisplaysError(string messageToDisplay, string name, string description, StringWriter standardWriter,
StringWriter errorWriter)
{
// arrange
GermlineWgsModeParser germlineWgsModeParser = new GermlineWgsModeParser(name, description);
MainParser parser = new MainParser(germlineWgsModeParser);
string[] noArgs =
{
};
// act
var result = parser.Parse(noArgs, standardWriter, errorWriter);
string errorOutput = errorWriter.ToString();
// assert
Assert.False(result.Success);
Assert.Contains(messageToDisplay, errorOutput);
Assert.Empty(standardWriter.ToString());
}
public void Parse_WithHelpArgument_ReturnsSuccecssAndDisplaysHelp(string messageToDisplay, string name, string description, StringWriter standardWriter,
StringWriter errorWriter)
{
// arrange
GermlineWgsModeParser germlineWgsModeParser = new GermlineWgsModeParser(name, description);
MainParser parser = new MainParser(germlineWgsModeParser);
string[] args =
{
"-h"
};
// act
var result = parser.Parse(args, standardWriter, errorWriter);
string standardOutput = standardWriter.ToString();
// assert
Assert.True(result.Success);
Assert.Contains(messageToDisplay, standardOutput);
Assert.Empty(errorWriter.ToString());
}
public void GermlineWgsParse_WithRequiredArguments_ReturnsSuccessfulCallsetResult(string name, string description, StringWriter standardWriter,
StringWriter errorWriter, TemporaryDirectoryFixture tempDirectory)
{
// arrange
GermlineWgsModeParser germlineWgsModeParser = new GermlineWgsModeParser(name, description);
MainParser parser = new MainParser(germlineWgsModeParser);
string[] args =
{
"-h"
};
// act
var result = parser.Parse(args, standardWriter, errorWriter);
// assert
Assert.True(result.Success);
}
public void Parse_ModeWithVersion_ReturnsSuccecssAndDisplaysVersion(string messageToDisplay, string name, string description,
StringWriter standardWriter, StringWriter errorWriter)
{
// arrange
GermlineWgsModeParser germlineWgsModeParser = new GermlineWgsModeParser("WGS", "Run Canvas from WGS data");
MainParser parser = new MainParser(germlineWgsModeParser);
string[] modeArgs =
{
"WGS", "-v"
};
// act
var result = parser.Parse(modeArgs, standardWriter, errorWriter);
string output = standardWriter.ToString();
// assert
Assert.True(result.Success);
string version = typeof(Program).Assembly.GetName().Version.ToString();
Assert.Contains(version, output);
Assert.Empty(errorWriter.ToString());
}
public void Parse_ModeWithMissingRequiredArgument_DisplaysError(string messageToDisplay, string name, string description, StringWriter standardWriter,
StringWriter errorWriter)
{
// arrange
GermlineWgsModeParser germlineWgsModeParser = new GermlineWgsModeParser("WGS", "Run Canvas from WGS data");
MainParser parser = new MainParser(germlineWgsModeParser);
string[] modeArgs =
{
"WGS"
};
// act
parser.Parse(modeArgs, standardWriter, errorWriter);
string errorOutput = errorWriter.ToString();
// assert
Assert.Contains(messageToDisplay, errorOutput);
Assert.Empty(standardWriter.ToString());
}