protected override IProcessor GetProcessor()
{
var options = new Bam2FastqProcessorOptions
{
InputFile = bamFile.FullName,
OutputPrefix = Path.ChangeExtension(bamFile.FullName, ".fastq"),
};
return new Bam2FastqProcessorCommand().GetProcessor(options);
}
protected override IProcessor GetProcessor()
{
var options = new Bam2FastqProcessorOptions
{
InputFile = bamFile.FullName,
OutputPrefix = Path.ChangeExtension(bamFile.FullName, ".fastq"),
};
return(new Bam2FastqProcessorCommand().GetProcessor(options));
}
public Bam2PairedFastqProcessor(Bam2FastqProcessorOptions option)
{
_options = option;
}
public Bam2PairedFastqNameSortedProcessor(Bam2FastqProcessorOptions option)
{
_options = option;
}
public Bam2SingleFastqProcessor(Bam2FastqProcessorOptions option)
{
_options = option;
}
public Bam2SingleFastqNameSortedProcessor(Bam2FastqProcessorOptions option)
{
_options = option;
}
public Bam2FastqProcessor(Bam2FastqProcessorOptions option)
{
options = option;
}
public Bam2FastqProcessor(Bam2FastqProcessorOptions option)
{
options = option;
}
