/********************************************************************/
/// <summary>
/// Sets the pattern string to search for
/// </summary>
/********************************************************************/
public void SetPattern(BMPattern pattern)
{
searchPattern = pattern;
String patternText = pattern.Pattern;
modifiedMainText = (originalMainText + new String(patternText[patternText.Length - 1], patternText.Length)).ToUpper();
Reset();
}
static void Main()
{
// Application.Run(new Form1());
BMPattern patt = new BMPattern("GCAGAGAG");
BMSearch search = new BMSearch("GCATCGCAGAGAGTATACAGTACG", patt);
int index;
while ((index = search.FindNext()) != -1)
{
System.Diagnostics.Debug.WriteLine(index.ToString());
}
search.SetPattern("Ta");
while ((index = search.FindNext()) != -1)
{
System.Diagnostics.Debug.WriteLine(index.ToString());
}
}
/********************************************************************/
/// <summary>
/// Initializes the class
/// </summary>
/********************************************************************/
private void Initialize(String text, BMPattern pattern)
{
originalMainText = text;
SetPattern(pattern);
}
/********************************************************************/
/// <summary>
/// Constructor
/// </summary>
/********************************************************************/
public BMSearch(String text, BMPattern pattern)
{
Initialize(text, pattern);
}