public bool DoJob()
{
detectInfos = ResultReader.Instance.Read();
patientInfos = ResultReader.Instance.ReadPatientInfos();
if (patientInfos != null)
{
patientInfos = patientInfos.Take(detectInfos.Count).ToList();
Console.WriteLine(string.Format("{0} samples", patientInfos.Count));
}
if (GlobalVars.Instance.TrackBarcode)
{
barcodeTracker = new BarcodeTracker(pipettingSettings, labwareSettings, patientInfos);
}
log.Info("read heights");
mappingCalculator = new MappingCalculator(Settings.Utility.GetExeFolder() + Settings.stringRes.calibFileName);
//PreparePlasmaDestPositions();
positionGenerator = new PositionGenerator(pipettingSettings, labwareSettings, detectInfos.Count);
int maxSampleAllowed = positionGenerator.AllowedSamples();
if (maxSampleAllowed < detectInfos.Count)
{
throw new Exception(string.Format("max allowed sample is: {0}", maxSampleAllowed));
}
string sOutput = Utility.GetOutputFolder();
int sourceRackCount = (int)Math.Ceiling((double)detectInfos.Count / labwareSettings.sourceWells);
WriteRacksCount(sourceRackCount);
string sOrgOutPut = sOutput;
RunResult runResult = new RunResult();
for (int srcRack = 0; srcRack < sourceRackCount; srcRack++)
{
sOutput = sOrgOutPut + "\\srcRack" + (srcRack + 1).ToString() + "\\";
if (!Directory.Exists(sOutput))
{
Directory.CreateDirectory(sOutput);
}
int thisRackSamples = srcRack == sourceRackCount - 1 ? (detectInfos.Count - srcRack * labwareSettings.sourceWells) : labwareSettings.sourceWells;
Utility.Write2File(sOutput + "totalSample.txt", thisRackSamples.ToString());
int batchNum = (int)Math.Ceiling((double)thisRackSamples / labwareSettings.tipCount);
Utility.Write2File(sOutput + "batchCount.txt", batchNum.ToString());
for (int startSample = 0; startSample < thisRackSamples; startSample += labwareSettings.tipCount)
{
List <DetectedInfo> heightsThisTime = new List <DetectedInfo>();
for (int tip = 0; tip < labwareSettings.tipCount; tip++)
{
if (tip + startSample >= thisRackSamples)
{
break;
}
heightsThisTime.Add(detectInfos[srcRack * labwareSettings.sourceWells + startSample + tip]);
}
GenerateForBatch(sOutput, srcRack, startSample, heightsThisTime);
AddEachSampleInfo2RunResult(srcRack, startSample, heightsThisTime, runResult);
}
}
if (GlobalVars.Instance.TrackBarcode)
{
barcodeTracker.WriteResult();
}
AddCommonInfo2RunResult(runResult);
SaveRunResult(runResult);
Thread.Sleep(1000);
return(true);
}
public bool DoJob()
{
detectInfos = ResultReader.Instance.Read();
patientInfos = ResultReader.Instance.ReadPatientInfos();
if(GlobalVars.Instance.TrackBarcode)
barcodeTracker = new BarcodeTracker(pipettingSetting, labwareSettings, patientInfos);
log.Info("read heights");
mappingCalculator = new MappingCalculator(Settings.Utility.GetExeFolder() + Settings.stringRes.calibFileName);
//PreparePlasmaDestPositions();
positionGenerator = new PositionGenerator(pipettingSetting, labwareSettings,detectInfos.Count);
int maxSampleAllowed = positionGenerator.AllowedSamples();
if (maxSampleAllowed < detectInfos.Count)
throw new Exception(string.Format("max allowed sample is: {0}",maxSampleAllowed));
string sOutput = Utility.GetOutputFolder();
int sourceRackCount = (int)Math.Ceiling((double)detectInfos.Count / labwareSettings.sourceWells);
WriteRacksCount(sourceRackCount);
string sOrgOutPut = sOutput;
RunResult runResult = new RunResult();
for (int srcRack = 0; srcRack < sourceRackCount; srcRack++)
{
sOutput = sOrgOutPut + "\\srcRack" + (srcRack + 1).ToString() + "\\";
if (!Directory.Exists(sOutput))
Directory.CreateDirectory(sOutput);
int thisRackSamples = srcRack == sourceRackCount - 1 ? (detectInfos.Count - srcRack * labwareSettings.sourceWells) : labwareSettings.sourceWells;
Utility.Write2File(sOutput + "totalSample.txt", thisRackSamples.ToString());
int batchNum = (int)Math.Ceiling((double)thisRackSamples / labwareSettings.tipCount);
Utility.Write2File(sOutput + "batchCount.txt", batchNum.ToString());
for (int startSample = 0; startSample < thisRackSamples; startSample += labwareSettings.tipCount)
{
List<DetectedInfo> heightsThisTime = new List<DetectedInfo>();
for (int tip = 0; tip < labwareSettings.tipCount; tip++)
{
if (tip + startSample >= thisRackSamples)
break;
heightsThisTime.Add(detectInfos[srcRack*labwareSettings.sourceWells+ startSample + tip]);
}
GenerateForBatch(sOutput,srcRack, startSample, heightsThisTime);
AddEachSampleInfo2RunResult(srcRack, startSample, heightsThisTime, runResult);
}
}
if(GlobalVars.Instance.TrackBarcode)
barcodeTracker.WriteResult();
AddCommonInfo2RunResult(runResult);
SaveRunResult(runResult);
return true;
}