public PairwaiseModule(IPairwiseSequenceProvider provider)
{
_provider = provider;
Post["/Align/Pairwise/Metadata"] = _ =>
{
var data = (SequenceModel[])NancyExtensionToPost.GetData <SequenceModel[]>(Request.Query);
return(Response.AsJson(_provider.GetMetadata(data)));
};
}
public NucmerModule(INucmerAlignerProvider provider)
{
_provider = provider;
Post["/Align/Nucmer/Standard/{minimum}/"] = _ =>
{
var data = (SequenceModel[])NancyExtensionToPost.GetData <SequenceModel[]>(Request.Query);
return(Response.AsJson(_provider.AlignSequences(data)));
};
Post["/Align/Nucmer/Simple/{minimum}/"] = _ =>
{
var data = (SequenceModel[])NancyExtensionToPost.GetData <SequenceModel[]>(Request.Query);
return(Response.AsJson(_provider.AlignSequencesSimple(data)));
};
}
public DeltaModule(IDeltaProvider provider)
{
_provider = provider;
Post["/Align/Delta/Delta"] = _ =>
{
var data = (SequenceModel[])NancyExtensionToPost.GetData <SequenceModel[]>(Request.Query);
return(Response.AsJson(_provider.GetDeltas(data)));
};
Post["/Align/Delta/IsReverse"] = _ =>
{
var data = (SequenceModel[])NancyExtensionToPost.GetData <SequenceModel[]>(Request.Query);
return(Response.AsJson(_provider.IsReverseQueryDirection(data)));
};
}
public NeedlemanModule(INeedlemanWunschAlignerProvider provider)
{
_provider = provider;
Post["/Align/Needleman/Standard"] = _ =>
{
var data = (SequenceModel[])NancyExtensionToPost.GetData <SequenceModel[]>(Request.Query);
return(Response.AsJson(_provider.AlignSequences(data)));
};
Post["/Align/Needleman/Simple"] = _ =>
{
var data = (SequenceModel[])NancyExtensionToPost.GetData <SequenceModel[]>(Request.Query);
return(Response.AsJson(_provider.AlignSequencesSimple(data)));
};
}
public ClusterModule(IClusterProvider provider)
{
_provider = provider;
Post["/Align/Cluster/Match"] = _ =>
{
var data = (Match[])NancyExtensionToPost.GetData <Match[]>(Request.Query);
return(Response.AsJson(_provider.GetMatches(data)));
};
Post["/Align/Cluster/IsReverse"] = _ =>
{
var data = (Match[])NancyExtensionToPost.GetData <Match[]>(Request.Query);
return(Response.AsJson(_provider.IsReverseQueryDirection(data)));
};
}