public static string GetQualityScoresString(this SAMAlignedSequence sam)
{
if (sam.Flag.HasFlag(SAMFlags.QueryOnReverseStrand))
{
return(new string(sam.GetEncodedQualityScores().Reverse().Select(a => (char)a).ToArray()));
}
else
{
return(new string(sam.GetEncodedQualityScores().Select(a => (char)a).ToArray()));
}
}