public NEATNetwork AddToPop(NEATGenome newGenome)
{
genomes.Add(newGenome);
NEATNetwork net = new NEATNetwork(newGenome);
networks.Add(net);
SpeciateOne(newGenome);
currentPopulation.Add(net, newGenome);
return(net);
}
public virtual void Evaluate(bool verbose = false)
{
genomes.Sort();
float bestFitness = float.MinValue;
for (int i = 0; i < networks.Count; i++)
{
if (networks[i].genome.Fitness > bestFitness)
{
bestFitness = networks[i].genome.Fitness;
lastGenBest = networks[i];
}
}
species.Clear();
species.Add(new Species(genomes[0]));
for (int i = 1; i < genomes.Count; i++)
{
bool newSpecies = true;
foreach (Species s in species)
{
if (s.BelongsToSpecies(genomes[i]))
{
newSpecies = false;
s.AddMemeber(genomes[i]);
break;
}
}
if (newSpecies)
{
species.Add(new Species(genomes[i]));
}
}
foreach (Species s in species)
{
s.AdjustFitnesses();
s.SortMembersByFitness();
}
species.Sort();
List <NEATGenome> newPop = new List <NEATGenome>();
for (int i = 0; i < popSize; i++)
{
Species rSpecies = GetRandomSpecies();
NEATGenome newGenome = NEATGenome.Reproduce(rSpecies.GetRandomMember(), rSpecies.GetRandomMember());
newPop.Add(newGenome);
}
generations++;
NextGeneration(newPop);
}
public void RemoveFromPop(NEATNetwork toRemove)
{
foreach (Species s in species)
{
if (s.Contains(toRemove.genome))
{
int sSize = s.RemoveMember(toRemove.genome);
if (sSize <= 0)
{
species.RemoveAt(species.IndexOf(s));
break;
}
}
}
networks.Remove(toRemove);
genomes.Remove(toRemove.genome);
currentPopulation.Remove(toRemove);
}
protected void Init(int inputSize, int outputSize, int startConnections)
{
for (int i = 0; i < popSize; i++)
{
NEATGenome newGenome = new NEATGenome(inputSize, outputSize);
for (int j = 0; j < startConnections; j++)
{
newGenome.CreateNewConnection();
}
Connection c = new Connection(0, 2, 1, true, 0);
Connection c2 = new Connection(1, 2, 1, true, 1);
newGenome.AddConnection(c);
newGenome.AddConnection(c2);
genomes.Add(newGenome);
NEATNetwork net = new NEATNetwork(newGenome);
networks.Add(net);
currentPopulation.Add(net, newGenome);
}
}
public void NextGeneration(List <NEATGenome> newGenomes)
{
if (newGenomes.Count != popSize)
{
throw new System.Exception("Invalid population initializer!");
}
currentPopulation.Clear();
species.Clear();
genomes.Clear();
networks.Clear();
//NEATGenome[] a = new NEATGenome[newGenomes.Count];
//newGenomes.CopyTo(a);
//genomes = a.ToList();
//newGenomes.Clear();
for (int i = 0; i < newGenomes.Count; i++)
{
genomes.Add(newGenomes[i]);
NEATNetwork net = new NEATNetwork(newGenomes[i]);
networks.Add(net);
currentPopulation.Add(net, newGenomes[i]);
}
newGenomes.Clear();
}
public virtual void Evaluate(Vector[] x, Vector[] y)
{
for (int k = 0; k < x.Length; k++)
{
for (int i = 0; i < networks.Count; i++)
{
Vector output = networks[i].RunNetwork(x[k]);
float error = Error(output.GetValue(0), y[k].GetValue(0));
/*if (error < bestError)
* {
* bestError = error;
* best = networks[i];
*
* }*/
NEATGenome genome;
currentPopulation.TryGetValue(networks[i], out genome);
if (genome != null)
{
genome.Error += error;
genome.Fitness += (1f / (error + 0.001f)) * 100f;
}
else
{
throw new System.Exception("invalid network to genome");
}
}
}
NEATNetwork best = networks[0];
float BestFitness = float.MinValue;
for (int i = 0; i < networks.Count; i++)
{
NEATGenome genome;
currentPopulation.TryGetValue(networks[i], out genome);
if (genome.Fitness > BestFitness)
{
BestFitness = genome.Fitness;
best = networks[i];
}
}
lastGenBest = best;
lastGenGenome = null;
currentPopulation.TryGetValue(best, out lastGenGenome);
if (lastGenGenome == null)
{
throw new System.Exception("Can't find genome for network?");
}
species.Add(new Species(genomes[0]));
for (int i = 1; i < genomes.Count; i++)
{
bool newSpecies = true;
foreach (Species s in species)
{
if (s.BelongsToSpecies(genomes[i]))
{
newSpecies = false;
s.AddMemeber(genomes[i]);
break;
}
}
if (newSpecies)
{
species.Add(new Species(genomes[i]));
}
}
foreach (Species s in species)
{
s.AdjustFitnesses();
s.SortMembersByFitness();
}
species.Sort();
genomes.Sort();
List <NEATGenome> newPop = new List <NEATGenome>();
for (int i = 0; i < 5; i++)
{
newPop.Add(genomes[i]);
}
for (int i = 0; i < popSize - 5; i++)
{
Species rSpecies = GetRandomSpecies();
NEATGenome newGenome = NEATGenome.Reproduce(rSpecies.GetRandomMember(), rSpecies.GetRandomMember());
newPop.Add(newGenome);
}
Debug.Log("Generation: " + generations + " | Error: " + lastGenGenome.Error / x.Length * 100f + "%" + " | Species: " + species.Count);
generations++;
NextGeneration(newPop);
}