public object Assemble(object cached, object owner)
{
if (cached == null)
{
return(null);
}
if (cached == DBNull.Value)
{
return(null);
}
if (!(cached is string))
{
throw new ArgumentException();
}
var serializedString = cached as string;
if (serializedString.IsNullOrEmpty())
{
return(null);
}
var result = new MZTolerance(serializedString);
return(result);
}
protected override void OnLoad(EventArgs e)
{
var settings = Properties.Settings.Default;
int presetIndex = maxQValueComboBox.Items.IndexOf((settings.DefaultMaxFDR * 100).ToString());
maxQValueComboBox.SelectedIndex = presetIndex;
if (presetIndex == -1)
{
maxQValueComboBox.Text = (settings.DefaultMaxFDR * 100).ToString();
}
presetIndex = maxImportFdrComboBox.Items.IndexOf((settings.DefaultMaxImportFDR * 100).ToString());
maxImportFdrComboBox.SelectedIndex = presetIndex;
if (presetIndex == -1)
{
maxImportFdrComboBox.Text = (settings.DefaultMaxImportFDR * 100).ToString();
}
minSpectraPerMatchTextBox.Text = settings.DefaultMinSpectraPerDistinctMatch.ToString();
minSpectraPerPeptideTextBox.Text = settings.DefaultMinSpectraPerDistinctPeptide.ToString();
if (settings.DefaultMaxPrecursorMzError.Length > 0)
{
var tmpMzError = new pwiz.CLI.chemistry.MZTolerance(settings.DefaultMaxPrecursorMzError);
maxPrecursorMzToleranceTextBox.Text = tmpMzError.value.ToString();
maxPrecursorMzToleranceUnitsComboBox.SelectedIndex = (int)tmpMzError.units;
}
else
{
maxPrecursorMzToleranceTextBox.Text = String.Empty;
maxPrecursorMzToleranceUnitsComboBox.SelectedIndex = 0;
}
maxProteinGroupsTextBox.Text = settings.DefaultMaxProteinGroupsPerPeptide.ToString();
minDistinctPeptidesTextBox.Text = settings.DefaultMinDistinctPeptides.ToString();
minSpectraTextBox.Text = settings.DefaultMinSpectra.ToString();
minAdditionalPeptidesTextBox.Text = settings.DefaultMinAdditionalPeptides.ToString();
defaultDecoyPrefixTextBox.Text = settings.DefaultDecoyPrefix;
maxImportRankTextBox.Text = settings.DefaultMaxRank.ToString();
ignoreUnmappedPeptidesCheckBox.Checked = settings.DefaultIgnoreUnmappedPeptides;
filterByGeneCheckBox.Checked = settings.DefaultGeneLevelFiltering;
chargeIsDistinctCheckBox.Checked = settings.DefaultChargeIsDistinct;
analysisIsDistinctCheckBox.Checked = settings.DefaultAnalysisIsDistinct;
modificationsAreDistinctCheckbox.Checked = settings.DefaultModificationsAreDistinct;
modificationRoundToMassTextBox.Text = settings.DefaultModificationRoundToNearest.ToString();
lbFastaPaths.Items.AddRange(settings.FastaPaths.Cast <object>().ToArray());
lbSourcePaths.Items.AddRange(settings.SourcePaths.Cast <object>().ToArray());
sourceExtensionsTextBox.Text = settings.SourceExtensions;
groupSeparatorTextBox.Text = settings.GroupConcatSeparator;
quantitationRollupMethodComboBox.SelectedIndex = (int)Properties.GUI.Settings.Default.QuantitationRollupMethod - 1;
nonFixedDriveWarningCheckBox.Checked = Properties.GUI.Settings.Default.WarnAboutNonFixedDrive;
embedGeneMetadataWarningCheckBox.Checked = Properties.GUI.Settings.Default.WarnAboutNoGeneMetadata;
base.OnLoad(e);
}
