/// <summary>
/// Gets dkCOIN resources
/// </summary>
/// <param name="resourceType">resourceType object</param>
/// <param name="resourceName">string object</param>
/// <param name="ignoreResourceType">bool object</param>
/// <returns>DKCoinResourceList object</returns>
public virtual DKCoinResourceList GetResources(string resourceType, string resourceName, bool ignoreResourceType)
{
try
{
dkCOIN.typeSearchResourceParams[] parameters = new dkCOIN.typeSearchResourceParams[1];
dkCOIN.typeSearchResourceParams param = new dkCOIN.typeSearchResourceParams();
if (!ignoreResourceType)
{
param.resourcetype = resourceType;
}
//
//EXCLUDE CURRENT CONSORTIUM'S DATA
string[] not_source_ids = new string[1];
string not_source_id = GetSourceID().ToString();
not_source_ids[0] = not_source_id;
param.not_source_id = not_source_ids;
if (!string.IsNullOrEmpty(resourceName))
param.name = resourceName;
parameters[0] = param;
return GetResources(parameters);
}
catch (Exception e)
{
EmailErrorNotification("dkCOIN Error: GetResources(string resourceType, string resourceName, bool ignoreResourceType)", e.Message);
return null;
}
}
/// <summary>
/// Check if the resource is in the dkCOIN database
/// </summary>
/// <param name="resource_name">string object</param>
/// <returns>bool object</returns>
public virtual bool ResourceExists(string resource_name)
{
try
{
dkCOIN.typeSearchResourceParams[] parameters = new dkCOIN.typeSearchResourceParams[1];
dkCOIN.typeSearchResourceParams param = new dkCOIN.typeSearchResourceParams();
param.name = resource_name;
string[] not_source_id = new string[1];
not_source_id[0] = (GetSourceID() == "2" ? "3" : "2");
param.not_source_id = not_source_id;
parameters[0] = param;
DKCoinResourceList resources = GetResources(parameters);
if (resources.Count > 0)
return true;
return false;
}
catch (Exception e)
{
EmailErrorNotification("dkCOIN Error: ResourceExists(string resource_name)", e.Message);
return false;
}
}
/// <summary>
/// Gets dkCOIN resources
/// </summary>
/// <param name="Search">DKCoinSearch Object</param>
/// <returns>DKCoinResourceList object</returns>
public virtual DKCoinResourceList GetResources(DKCoinSearch Search)
{
try
{
FilterResourceTypes = Search.FilterResourceTypes;
dkCOIN.typeSearchResourceParams[] parameters = new dkCOIN.typeSearchResourceParams[1];
dkCOIN.typeSearchResourceParams param = new dkCOIN.typeSearchResourceParams();
if (!string.IsNullOrEmpty(Search.ResourceType))
param.resourcetype = Search.ResourceType;
//
//EXCLUDE CURRENT CONSORTIUM'S DATA
string[] not_source_ids = new string[1];
string not_source_id = GetSourceID().ToString();
not_source_ids[0] = not_source_id;
param.not_source_id = not_source_ids;
if (!string.IsNullOrEmpty(Search.ResourceName))
param.name = Search.ResourceName;
if (Search.gene_ids != null)
param.gene_id = Search.gene_ids;
if (Search.term_ids != null)
param.term_identifier = Search.term_ids;
if (Search.PubMed != null && !string.IsNullOrEmpty(Search.PubMed.pubmed_id))
{
dkCOIN.typePublication[] pubmedids = new dkCOIN.typePublication[1];
pubmedids[0] = Search.PubMed;
param.pubmed = pubmedids;
}
if (!string.IsNullOrEmpty(Search.Source))
param.source_id = Search.Source;
parameters[0] = param;
DKCoinResourceList resources = GetResources(parameters);
return resources;
}
catch (Exception e)
{
EmailErrorNotification("GetResources(DKCoinSearch Search)", e.Message);
return null;
}
}
/// <summary>
/// Gets dkCOIN resources
/// </summary>
/// <param name="gene_ids">string object</param>
/// <returns>DKCoinResourceList object</returns>
public virtual DKCoinResourceList GetResources(string[] gene_ids)
{
try
{
if (gene_ids == null || gene_ids.Length == 0)
return DKCoinResourceList.New();
dkCOIN.typeSearchResourceParams[] parameters = new dkCOIN.typeSearchResourceParams[1];
dkCOIN.typeSearchResourceParams param = new dkCOIN.typeSearchResourceParams();
param.gene_id = gene_ids;
//
//EXCLUDE CURRENT CONSORTIUM'S DATA
string[] not_source_ids = new string[1];
string not_source_id = GetSourceID().ToString();
not_source_ids[0] = not_source_id;
param.not_source_id = not_source_ids;
parameters[0] = param;
return GetResources(parameters);
}
catch (Exception e)
{
EmailErrorNotification("dkCOIN Error: GetResources(string[] gene_ids)", e.Message);
return null;
}
}
