public void validate_deserialization_of_SimulationInput()
{
var jsonSerialized = VtsMonteCarloJsonSerializer.WriteToJson(new SimulationInput());
var inputDeserialized = VtsMonteCarloJsonSerializer.ReadFromJson <SimulationInput>(jsonSerialized);
Assert.IsTrue(inputDeserialized != null);
}
public void validate_deserialization_of_SimulationInput_from_file()
{
VtsMonteCarloJsonSerializer.WriteToJsonFile(new SimulationInput(), "VtsJsonSerializerTests_file3.txt");
var objectDeserialized = VtsMonteCarloJsonSerializer.ReadFromJsonFile <SimulationInput>("VtsJsonSerializerTests_file3.txt");
Assert.IsTrue(objectDeserialized != null);
}
/// <summary>
/// constructor that loads scaled Monte Carlo reference data and database
/// </summary>
public MonteCarloLoader()
{
VtsMonteCarloJsonSerializer.PreInitialize();
//nfxReference = 100;
//dfxReference = 1.0 / nfxReference;
InitializeVectorsAndInterpolators();
}
public void validate_serialization_of_LayerRegion()
{
var layer = new LayerTissueRegion(
zRange: new DoubleRange(3, 4, 2),
op: new OpticalProperties(mua: 0.011, musp: 1.1, g: 0.99, n: 1.44));
var jsonSerialized = VtsMonteCarloJsonSerializer.WriteToJson(layer);
Assert.IsTrue(jsonSerialized != null && jsonSerialized.Length > 0);
}
public void validate_serialization_and_deserialization_of_gaussiansourceprofile_runs_successfully()
{
var source = new CustomCircularSourceInput
{
BeamDiameterFWHM = 1.0,
};
var sourceSerialized = VtsMonteCarloJsonSerializer.WriteToJson(source);
var sourceDeserialized = VtsMonteCarloJsonSerializer.ReadFromJson <CustomCircularSourceInput>(sourceSerialized);
Assert.IsTrue(sourceDeserialized.BeamDiameterFWHM == 1.0);
}
public void validate_serialization_of_MultiLayerTissueInput()
{
var layer0 = new LayerTissueRegion(
zRange: new DoubleRange(2.0, 3.0, 2),
op: new OpticalProperties(mua: 0.011, musp: 1.1, g: 0.99, n: 1.44));
var layer1 = new LayerTissueRegion(
zRange: new DoubleRange(3.0, 4.0, 2),
op: new OpticalProperties(mua: 0.0111, musp: 1.11, g: 0.999, n: 1.444));
var multiRegionInput = new MultiLayerTissueInput(new[] { layer0, layer1 });
var jsonSerialized = VtsMonteCarloJsonSerializer.WriteToJson(multiRegionInput);
Assert.IsTrue(jsonSerialized != null && jsonSerialized.Length > 0);
}
public void validate_deserialization_of_LayerRegion()
{
Func <double, double, bool> areRoughlyEqual = (a, b) => Math.Abs(a - b) < 0.001;
var layer = new LayerTissueRegion(
zRange: new DoubleRange(3.0, 4.0, 2),
op: new OpticalProperties(mua: 0.011, musp: 1.1, g: 0.99, n: 1.44));
var jsonSerialized = VtsMonteCarloJsonSerializer.WriteToJson(layer);
var layerDeserialized = VtsMonteCarloJsonSerializer.ReadFromJson <LayerTissueRegion>(jsonSerialized);
Assert.IsTrue(layerDeserialized != null);
Assert.IsTrue(areRoughlyEqual(layerDeserialized.ZRange.Start, 3.0));
Assert.IsTrue(areRoughlyEqual(layerDeserialized.ZRange.Stop, 4.0));
Assert.IsTrue(areRoughlyEqual(layerDeserialized.ZRange.Count, 2));
Assert.IsTrue(areRoughlyEqual(layerDeserialized.RegionOP.Mua, 0.011));
Assert.IsTrue(areRoughlyEqual(layerDeserialized.RegionOP.Musp, 1.1));
Assert.IsTrue(areRoughlyEqual(layerDeserialized.RegionOP.G, 0.99));
Assert.IsTrue(areRoughlyEqual(layerDeserialized.RegionOP.N, 1.44));
}
public void validate_deserialization_of_MultiLayerTissueInput()
{
Func <double, double, bool> areRoughlyEqual = (a, b) => Math.Abs(a - b) < 0.001;
var layer0 = new LayerTissueRegion(
zRange: new DoubleRange(2.0, 3.0, 2),
op: new OpticalProperties(mua: 0.011, musp: 1.1, g: 0.99, n: 1.44));
var layer1 = new LayerTissueRegion(
zRange: new DoubleRange(3.0, 4.0, 2),
op: new OpticalProperties(mua: 0.0111, musp: 1.11, g: 0.999, n: 1.444));
var multiRegionInput = new MultiLayerTissueInput(new[] { layer0, layer1 });
var jsonSerialized = VtsMonteCarloJsonSerializer.WriteToJson(multiRegionInput);
var multiRegionInputDeserialized = VtsMonteCarloJsonSerializer.ReadFromJson <MultiLayerTissueInput>(jsonSerialized);
Assert.IsTrue(multiRegionInputDeserialized != null);
var region0Deserialized = (LayerTissueRegion)multiRegionInputDeserialized.Regions[0];
Assert.IsTrue(areRoughlyEqual(region0Deserialized.ZRange.Start, 2.0));
Assert.IsTrue(areRoughlyEqual(region0Deserialized.ZRange.Stop, 3.0));
Assert.IsTrue(areRoughlyEqual(region0Deserialized.ZRange.Count, 2));
Assert.IsTrue(areRoughlyEqual(region0Deserialized.RegionOP.Mua, 0.011));
Assert.IsTrue(areRoughlyEqual(region0Deserialized.RegionOP.Musp, 1.1));
Assert.IsTrue(areRoughlyEqual(region0Deserialized.RegionOP.G, 0.99));
Assert.IsTrue(areRoughlyEqual(region0Deserialized.RegionOP.N, 1.44));
var region1Deserialized = (LayerTissueRegion)multiRegionInputDeserialized.Regions[1];
Assert.IsTrue(areRoughlyEqual(region1Deserialized.ZRange.Start, 3.0));
Assert.IsTrue(areRoughlyEqual(region1Deserialized.ZRange.Stop, 4.0));
Assert.IsTrue(areRoughlyEqual(region1Deserialized.ZRange.Count, 2));
Assert.IsTrue(areRoughlyEqual(region1Deserialized.RegionOP.Mua, 0.0111));
Assert.IsTrue(areRoughlyEqual(region1Deserialized.RegionOP.Musp, 1.11));
Assert.IsTrue(areRoughlyEqual(region1Deserialized.RegionOP.G, 0.999));
Assert.IsTrue(areRoughlyEqual(region1Deserialized.RegionOP.N, 1.444));
}
public void validate_serialization_of_SimulationInput()
{
var jsonSerialized = VtsMonteCarloJsonSerializer.WriteToJson(new SimulationInput());
Assert.IsTrue(jsonSerialized != null && jsonSerialized.Length > 0);
}
/// <summary>
/// Method to read SimulationInput from JSON file
/// </summary>
/// <param name="filename">string filename of file to be read</param>
/// <returns>SimulationInput</returns>
public static SimulationInput FromFile(string filename)
{
VtsMonteCarloJsonSerializer.PreInitialize();
return(FileIO.ReadFromJson <SimulationInput>(filename));
}
