public void ValidateVQSLCopyTo()
{
VirtualQualitativeSequenceList seqList =
GetVirtualQualitativeSequenceList(
Constants.LargeSizeDnaIlluminaFastQNode);
ICollection <ISequence> seqCopy = seqList;
int i = seqCopy.Count;
IQualitativeSequence[] seqArray = new IQualitativeSequence[i];
seqList.CopyTo(seqArray, 0);
Assert.AreEqual(seqList[0].ToString(),
seqArray[0].ToString());
Assert.AreEqual(seqList[i - 1].ToString(),
seqArray[i - 1].ToString());
seqCopy.CopyTo(seqArray, 0);
Assert.AreEqual(seqList[0].ToString(),
seqArray[0].ToString());
Assert.AreEqual(seqList[i - 1].ToString(),
seqArray[i - 1].ToString());
ApplicationLog.WriteLine(
"VQSL Bvt : Successfully validated the CopyTo() method");
Console.WriteLine(
"VQSL Bvt : Successfully validated the CopyTo() method");
}
/// <summary>
/// Genral method to validate virtual quality sequence list
/// </summary>
/// <param name="param">Method Name</param>
static void ValidateVirtualQualitativeSequenceList(
VirtualQualSeqListTestAttributes param)
{
VirtualQualitativeSequenceList seqList =
GetVirtualQualitativeSequenceList(
Constants.LargeSizeDnaIlluminaFastQNode);
ICollection <ISequence> seqCollection = seqList;
ICollection <IQualitativeSequence> seqQual = seqList;
IList <ISequence> listSeq = seqList;
IList <IQualitativeSequence> listQual = seqList;
try
{
switch (param)
{
case VirtualQualSeqListTestAttributes.Add:
seqList.Add((IQualitativeSequence)
new QualitativeSequence(
Alphabets.DNA,
FastQFormatType.Illumina, "ACCTT"));
break;
case VirtualQualSeqListTestAttributes.AddCollection:
seqCollection.Add(null as ISequence);
break;
case VirtualQualSeqListTestAttributes.ClearQual:
seqQual.Clear();
break;
case VirtualQualSeqListTestAttributes.ClearSeq:
seqCollection.Clear();
break;
case VirtualQualSeqListTestAttributes.CopyTo:
seqList.CopyTo(null, 1);
break;
case VirtualQualSeqListTestAttributes.Indexer:
seqList[0] = null;
break;
case VirtualQualSeqListTestAttributes.IndexerSeq:
listSeq[0] = null;
break;
case VirtualQualSeqListTestAttributes.Insert:
seqList.Insert(0,
(IQualitativeSequence) new QualitativeSequence(
Alphabets.DNA,
FastQFormatType.Illumina, "ACCTT"));
break;
case VirtualQualSeqListTestAttributes.InsertSeq:
listSeq.Insert(0,
(IQualitativeSequence) new QualitativeSequence(
Alphabets.DNA,
FastQFormatType.Illumina, "ACCTT"));
break;
case VirtualQualSeqListTestAttributes.Remove:
seqList.Remove(
(IQualitativeSequence)
new QualitativeSequence(
Alphabets.DNA,
FastQFormatType.Illumina, "ACCTT"));
break;
case VirtualQualSeqListTestAttributes.RemoveCollection:
seqCollection.Remove(
(IQualitativeSequence)
new QualitativeSequence(
Alphabets.DNA,
FastQFormatType.Illumina, "ACCTT"));
break;
case VirtualQualSeqListTestAttributes.RemoveAtQual:
listQual.RemoveAt(-1);
break;
case VirtualQualSeqListTestAttributes.RemoveAtSeq:
listSeq.RemoveAt(-1);
break;
}
Assert.Fail();
}
catch (NotSupportedException)
{
ApplicationLog.WriteLine(
"VQSL P2 : Successfully validated the method");
Console.WriteLine(
"VQSL P2 : Successfully validated the method");
}
catch (ArgumentNullException)
{
ApplicationLog.WriteLine(
"VQSL P2 : Successfully validated the method");
Console.WriteLine(
"VQSL P2 : Successfully validated the method");
}
}