public bool AsBool()
{
switch (m_Type)
{
case VariantType.Null:
return(false);
case VariantType.Bool:
return(m_BoolValue);
case VariantType.Int:
return(m_IntValue > 0);
case VariantType.UInt:
return(m_UIntValue > 0);
case VariantType.Float:
return(m_FloatValue > 0);
case VariantType.StringHash:
return(!m_StringHashValue.IsEmpty);
default:
throw new InvalidOperationException("Variant type " + m_Type.ToString() + " not recognized");
}
}
public string GetJsonString()
{
var sb = StringBuilderCache.Acquire();
var jsonObject = new JsonObject(sb);
jsonObject.AddStringValue("chromosome", Chromosome.EnsemblName);
jsonObject.AddIntValue("begin", Start);
jsonObject.AddIntValue("end", End);
jsonObject.AddStringValue("variantType", VariantType.ToString());
jsonObject.AddStringValue("id", Id);
jsonObject.AddStringValue("clinicalInterpretation", GetClinicalDescription(ClinicalInterpretation));
jsonObject.AddStringValues("phenotypes", Phenotypes);
jsonObject.AddStringValues("phenotypeIds", PhenotypeIds);
if (ObservedGains > 0)
{
jsonObject.AddIntValue("observedGains", ObservedGains);
}
if (ObservedLosses > 0)
{
jsonObject.AddIntValue("observedLosses", ObservedLosses);
}
jsonObject.AddBoolValue("validated", Validated);
return(StringBuilderCache.GetStringAndRelease(sb));
}
private async Task WriteSupplierFile(Task obj)
{
Console.WriteLine("Write supplier");
using (var fw = new CsvSupplierOutputWriter(_configuration)) {
await fw.WriteAsync(new SupplierNode { Code = _variant.ToString(), Name = _variant.ToString() }).ConfigureAwait(false);
}
}
public static bool BkDXFSysVar_CheckType(string vstrVarName, VariantType vnumVarType, object vvarArraySize, object vvarValue, ref string rstrErrMsg)
{
rstrErrMsg = null;
if (Information.VarType(RuntimeHelpers.GetObjectValue(vvarValue)) != vnumVarType && vnumVarType != VariantType.Char && vnumVarType != VariantType.Decimal && vnumVarType != VariantType.Short)
{
hwpDxf_Functions.BkDXF_DebugPrint("1: " + vstrVarName + " " + Conversions.ToString((int)Information.VarType(RuntimeHelpers.GetObjectValue(vvarValue))) + " " + Conversions.ToString((int)vnumVarType));
rstrErrMsg = vstrVarName + "\nUngültiger Variablentyp. Soll: " + vnumVarType.ToString() + ", Ist: " + Information.VarType(RuntimeHelpers.GetObjectValue(vvarValue));
}
else if (((Information.VarType(RuntimeHelpers.GetObjectValue(vvarValue)) != VariantType.Char) & (Information.VarType(RuntimeHelpers.GetObjectValue(vvarValue)) != VariantType.String)) && vnumVarType == VariantType.Char)
{
hwpDxf_Functions.BkDXF_DebugPrint("2: " + vstrVarName + " " + Conversions.ToString((int)Information.VarType(RuntimeHelpers.GetObjectValue(vvarValue))) + " " + Conversions.ToString((int)vnumVarType));
rstrErrMsg = vstrVarName + "\nUngültiger Variablentyp. Soll: " + vnumVarType.ToString() + ", Ist: " + Information.VarType(RuntimeHelpers.GetObjectValue(vvarValue));
}
else if (((Information.VarType(RuntimeHelpers.GetObjectValue(vvarValue)) != VariantType.Decimal) & (Information.VarType(RuntimeHelpers.GetObjectValue(vvarValue)) != VariantType.Double)) && vnumVarType == VariantType.Decimal)
{
hwpDxf_Functions.BkDXF_DebugPrint("3: " + vstrVarName + " " + Conversions.ToString((int)Information.VarType(RuntimeHelpers.GetObjectValue(vvarValue))) + " " + Conversions.ToString((int)vnumVarType));
rstrErrMsg = vstrVarName + "\nUngültiger Variablentyp. Soll: " + vnumVarType.ToString() + ", Ist: " + Information.VarType(RuntimeHelpers.GetObjectValue(vvarValue));
}
else if (((Information.VarType(RuntimeHelpers.GetObjectValue(vvarValue)) != VariantType.Short) & (Information.VarType(RuntimeHelpers.GetObjectValue(vvarValue)) != VariantType.Integer)) && vnumVarType == VariantType.Short)
{
hwpDxf_Functions.BkDXF_DebugPrint("4: " + vstrVarName + " " + Conversions.ToString((int)Information.VarType(RuntimeHelpers.GetObjectValue(vvarValue))) + " " + Conversions.ToString((int)vnumVarType));
rstrErrMsg = vstrVarName + "\nUngültiger Variablentyp. Soll: " + vnumVarType.ToString() + ", Ist: " + Information.VarType(RuntimeHelpers.GetObjectValue(vvarValue));
}
else
{
if ((VariantType.Array & vnumVarType) != VariantType.Array)
{
return(true);
}
if (vvarArraySize != null)
{
if (!Conversions.ToBoolean(Operators.NotObject(Operators.CompareObjectEqual(Information.UBound((Array)vvarValue), Operators.SubtractObject(vvarArraySize, 1), TextCompare: false))))
{
return(true);
}
rstrErrMsg = "Ungültige Arraygröße für Variable.";
}
}
bool BkDXFSysVar_CheckType = default(bool);
return(BkDXFSysVar_CheckType);
}
public string GetJsonContent()
{
var sb = new StringBuilder();
var jsonObject = new JsonObject(sb);
// data section
jsonObject.AddStringValue("chromosome", ReferenceName);
jsonObject.AddIntValue("begin", Start);
jsonObject.AddIntValue("end", End);
jsonObject.AddStringValue("source", Source);
jsonObject.AddStringValue("variantType", VariantType.ToString());
foreach (var kvp in PopulationFrequencies)
{
if (kvp.Value > 0)
{
jsonObject.AddStringValue(kvp.Key, kvp.Value.ToString("0.#####"), false);
}
}
foreach (var kvp in StringValues)
{
jsonObject.AddStringValue(kvp.Key, kvp.Value);
}
foreach (var kvp in IntValues)
{
jsonObject.AddIntValue(kvp.Key, kvp.Value);
}
foreach (var kvp in DoubleValues)
{
if (kvp.Value > 0)
{
jsonObject.AddStringValue(kvp.Key, kvp.Value.ToString("0.#####"), false);
}
}
foreach (var kvp in BoolValues)
{
jsonObject.AddBoolValue(kvp, true, true, "true");
}
foreach (var kvp in StringLists)
{
jsonObject.AddStringValues(kvp.Key, kvp.Value);
}
return(sb.ToString());
}
/// <summary>
/// Gets the byte serialization tag for a given type.
/// </summary>
/// <param name="type">Type to look up.</param>
/// <returns>The tag to use for (de)serialization.</returns>
public byte GetTag()
{
MemberInfo enumMember = typeof(Type).GetMember(VariantType.ToString())
.FirstOrDefault();
TagAttribute tag = enumMember.GetCustomAttribute <TagAttribute>();
if (tag == null)
{
// Shouldn't happen
throw new InvalidOperationException();
}
return(tag.Value);
}
public string GetJsonString()
{
var sb = StringBuilderCache.Acquire();
var jsonObject = new JsonObject(sb);
// data section
jsonObject.AddStringValue("chromosome", Chromosome.EnsemblName);
jsonObject.AddIntValue("begin", Start);
jsonObject.AddIntValue("end", End);
jsonObject.AddStringValue("variantType", VariantType.ToString());
foreach (var kvp in PopulationFrequencies)
{
if (kvp.Value > 0)
{
jsonObject.AddStringValue(kvp.Key, kvp.Value.ToString("0.#####"), false);
}
}
foreach (var kvp in StringValues)
{
jsonObject.AddStringValue(kvp.Key, kvp.Value);
}
foreach (var kvp in IntValues)
{
jsonObject.AddIntValue(kvp.Key, kvp.Value);
}
foreach (var kvp in DoubleValues)
{
if (kvp.Value > 0)
{
jsonObject.AddStringValue(kvp.Key, kvp.Value.ToString("0.#####"), false);
}
}
foreach (var kvp in BoolValues)
{
jsonObject.AddBoolValue(kvp, true);
}
foreach (var kvp in StringLists)
{
jsonObject.AddStringValues(kvp.Key, kvp.Value.ToArray());
}
return(StringBuilderCache.GetStringAndRelease(sb));
}
public string GetJsonString()
{
var sb = StringBuilderCache.Acquire();
var jsonObject = new JsonObject(sb);
jsonObject.AddIntValue("id", CNVId);
jsonObject.AddStringValue("variantType", _cnvType.ToString());
if (_copyNumber != -1)
{
jsonObject.AddIntValue("copyNumber", _copyNumber);
}
jsonObject.AddStringValues("cancerTypes", GetJsonStrings(_cancerTypes), false);
jsonObject.AddStringValues("tissueTypes", GetJsonStrings(_tissueTypes), false);
return(sb.ToString());
}
public string GetJsonString()
{
var sb = StringBuilderCache.Acquire();
var jsonObject = new JsonObject(sb);
jsonObject.AddStringValue("chromosome", Chromosome.EnsemblName);
jsonObject.AddIntValue("begin", Start);
jsonObject.AddIntValue("end", End);
jsonObject.AddStringValue("variantType", VariantType.ToString());
jsonObject.AddStringValue("id", Id);
jsonObject.AddIntValue("allAn", _allAlleleNumber);
jsonObject.AddIntValue("allAc", _allAlleleCount);
jsonObject.AddDoubleValue("allAf", _allAlleleFrequency, "0.######");
jsonObject.AddDoubleValue("afrAf", _afrAlleleFrequency, "0.######");
jsonObject.AddDoubleValue("amrAf", _amrAlleleFrequency, "0.######");
jsonObject.AddDoubleValue("eurAf", _eurAlleleFrequency, "0.######");
jsonObject.AddDoubleValue("easAf", _easAlleleFrequency, "0.######");
jsonObject.AddDoubleValue("sasAf", _sasAlleleFrequency, "0.######");
return(StringBuilderCache.GetStringAndRelease(sb));
}
public string GetJsonString()
{
var sb = StringBuilderCache.Acquire();
var jsonObject = new JsonObject(sb);
jsonObject.AddStringValue("chromosome", Chromosome.EnsemblName);
jsonObject.AddIntValue("begin", Start);
jsonObject.AddIntValue("end", End);
jsonObject.AddStringValue("variantType", VariantType.ToString());
jsonObject.AddStringValue("id", Id);
jsonObject.AddIntValue("sampleSize", SampleSize);
if (ObservedGains != 0)
{
jsonObject.AddIntValue("observedGains", ObservedGains);
}
if (ObservedLosses != 0)
{
jsonObject.AddIntValue("observedLosses", ObservedLosses);
}
jsonObject.AddDoubleValue("variantFreqAll", VariantFreqAll, "0.#####");
return(StringBuilderCache.GetStringAndRelease(sb));
}