public void TestHMM2()
{
var comparer = new SequenceComparer <string>();
var states = new[] { "Healthy", "Fever" };
var emits = new[] { "normal", "cold", "dizzy" };
Uncertain <string>[] source = new[] {
new Multinomial <string>(emits, new [] { 0.8, 0.1, 0.1 }),
new Multinomial <string>(emits, new [] { 0.2, 0.7, 0.1 }),
new Multinomial <string>(emits, new [] { 0.05, 0.05, 0.9 }),
};
Uncertain <string[]> observations = source.USeq(3);
var program = from obs in observations
from result in HMM(obs)
select result;
var program1 = from obs in observations
from result in HMM(obs).Inference(comparer)
select result;
var program2 = from obs in observations.Inference(comparer)
from result in HMM(obs).Inference(comparer)
select result;
var output = program.Inference(comparer).Support().OrderByDescending(k => k.Probability).ToList();
var output1 = program1.Inference(comparer).Support().OrderByDescending(k => k.Probability).ToList();
var output2 = program2.Inference(comparer).Support().OrderByDescending(k => k.Probability).ToList();
var output3 = HMM2(observations).Inference(comparer).Support().OrderByDescending(k => k.Probability).ToList();
var timer = new System.Diagnostics.Stopwatch();
timer.Start();
var sampled = program.SampledInference(10000, comparer).Support().OrderByDescending(k => k.Probability).ToList();
timer.Stop();
System.Diagnostics.Debug.WriteLine(timer.Elapsed);
timer.Reset();
timer.Start();
var sampled1 = program1.SampledInference(10000, comparer).Support().OrderByDescending(k => k.Probability).ToList();
timer.Stop();
System.Diagnostics.Debug.WriteLine(timer.Elapsed);
timer.Reset();
timer.Start();
var sampled2 = program2.SampledInference(10000, comparer).Support().OrderByDescending(k => k.Probability).ToList();
timer.Stop();
System.Diagnostics.Debug.WriteLine(timer.Elapsed);
Assert.IsTrue(comparer.Equals(output[0].Value, sampled[0].Value));
Assert.IsTrue(Math.Abs(output[0].Probability - sampled[0].Probability) < 0.1);
Assert.IsTrue(comparer.Equals(output[0].Value, output3[0].Value));
Assert.IsTrue(Math.Abs(output[0].Probability - output3[0].Probability) < 0.1);
int x = 10;
}
public void Base_Binomial()
{
Uncertain <int> binomial = from a in new Flip(0.5)
from b in new Flip(0.5)
from c in new Flip(0.5)
let path = Convert.ToInt32(a) + Convert.ToInt32(b) + Convert.ToInt32(c)
select path;
var dist = binomial.Inference().Support().OrderBy(k => k.Value).Select(k => k.Probability).ToList();
var items = new[] { 0.125, 0.375, 0.375, 0.125 };
for (int i = 0; i < items.Length; i++)
{
Assert.IsTrue(items[i] == dist[i]);
}
}
