/// <inheritdoc />
public IEnumerable <Common.Consent.Consent> GetConsentsForSubject(StudyIdentity studyIdentity, string subjectIdentifier)
{
return
(from c in (
from c in ConsentsFor(studyIdentity, subjectIdentifier)
.Include(_ => _.GivenEvidence).Include(_ => _.WithdrawnEvidence)
orderby c.DateProvided descending
let subject = c.StudySubject
let person = subject.Person
select new
{
StudySubject = new StudySubject(studyIdentity, subjectIdentifier,
new PersonIdentity(person.Id)),
c.DateProvided,
c.DateWithdrawn,
GivenById = (long?)c.GivenBy.Id,
GivenEvidence = c.GivenEvidence.ToArray(),
WithdrawnEvidence = c.WithdrawnEvidence.ToArray()
}
).ToArray()
select new Common.Consent.Consent(
c.StudySubject,
c.DateProvided,
c.GivenById,
c.GivenEvidence?.AsQueryable().Select(MarshallEvidenceFromEntity()))
{
DateWithdrawn = c.DateWithdrawn,
WithdrawnEvidence = c.WithdrawnEvidence?.AsQueryable().Select(MarshallEvidenceFromEntity())
});
}
/// <inheritdoc />
public ConsentControllerTestBase()
{
Study = Create.Study;
StudyId = new StudyIdentity(Study.Id);
StudySubject = new StudySubject(StudyId, "AA100023", new PersonIdentity(500L));
Studies = CreateStudyRepository(Study);
StudySubjects = CreateSubjectRepository(Study, StudySubject);
Consents = CreateConsentRepository(Study, StudySubject);
}
/// <inheritdoc />
public string GenerateIdentifier(StudyIdentity studyIdentity)
{
var current = SubjectIdentifiers.SingleOrDefault(_ => _.StudyId == studyIdentity.Id);
if (current == null)
{
if (!Studies.Any(_ => _.Id == studyIdentity.Id))
{
throw new InvalidOperationException($"No study found for {studyIdentity}");
}
current = SubjectIdentifiers.Add(new SubjectIdentifierEntity {
StudyId = studyIdentity
});
}
var id = current.CurrentValue += 1;
return($"{id:x16}");
}
StudySubject IStudySubjectRepository.FindStudySubject(StudyIdentity study, PersonIdentity personId)
{
return(GetStudySubject(FindStudySubjectForPerson(study, personId)));
}
StudySubject IStudySubjectRepository.GetStudySubject(StudyIdentity study, string subjectIdentifier) => GetStudySubject(SubjectsForStudy(study).Where(_ => _.SubjectIdentifier == subjectIdentifier));
/// <inheritdoc /> public Study GetStudy(StudyIdentity studyId) => context.Studies .Where(_ => _.Id == studyId.Id) .Select(_ => new Study(new StudyIdentity(_.Id), _.Name)) .SingleOrDefault();
/// <inheritdoc />
public ConsentedPersonSpecification(StudyIdentity studyId)
{
StudyId = studyId;
}
/// <inheritdoc />
public Study(long id, string name = null) : this(name)
{
Id = new StudyIdentity(id);
}
/// <inheritdoc />
public ConsentRepositoryTests(ITestOutputHelper outputHelper, DatabaseFixture fixture) : base(outputHelper, fixture)
{
readContext = CreateNewContextInSameTransaction();
updateContext = CreateNewContextInSameTransaction();
createContext = CreateNewContextInSameTransaction();
study = createContext.Studies.Add(new StudyEntity {
Name = Random.String()
}).Entity;
var consentedPerson = createContext.People.Add(new PersonEntity()).Entity;
consentedStudySubject = createContext.Add(new StudySubjectEntity {
Study = study, Person = consentedPerson, SubjectIdentifier = "Consented"
}).Entity;
createContext.Add(
new ConsentEntity
{
StudySubject = consentedStudySubject,
DateProvided = 1.December(1965),
DateWithdrawn = 1.January(1966),
GivenBy = consentedPerson
});
activeConsent = createContext.Add(
new ConsentEntity
{
StudySubject = consentedStudySubject,
DateProvided = 1.February(1966),
GivenBy = consentedPerson
}).Entity;
var unconsentedPerson = createContext.People.Add(new PersonEntity()).Entity;
createContext.Add(
new StudySubjectEntity {
Study = study, Person = unconsentedPerson, SubjectIdentifier = "Unconsented"
});
var withdrawnConsent = createContext.Add(new PersonEntity()).Entity;
var withdrawnSubject = createContext.Add(
new StudySubjectEntity {
Study = study, Person = withdrawnConsent, SubjectIdentifier = "Withdrawn"
}).Entity;
withdrawnSubjectWithdrawnDate = 5.January(2018);
createContext.Add(new ConsentEntity
{
StudySubject = withdrawnSubject,
DateProvided = 1.December(2017),
DateWithdrawn = withdrawnSubjectWithdrawnDate,
GivenBy = withdrawnConsent
});
createContext.SaveChanges();
studyId = new StudyIdentity(study.Id);
consentedPersonId = consentedPerson;
unconsentedPersonId = unconsentedPerson;
withdrawnPersonId = withdrawnConsent;
consents = CreateConsentRepository(readContext);
studySubjects = CreateStudySubjectRepository(readContext);
studies = CreateStudyRepository(readContext);
}