public override bool Equals(object obj)
{
SpliceSite s = obj as SpliceSite;
return(s != null &&
s.OneBasedBeginPosition == OneBasedBeginPosition &&
s.OneBasedEndPosition == OneBasedEndPosition &&
s.Description == Description);
}
public void TestHashAndEqualsSpliceSite()
{
SpliceSite ss1 = new SpliceSite(1, 2, "description");
SpliceSite ss11 = new SpliceSite(1, 2, "description");
SpliceSite ss2 = new SpliceSite(1, 2, null);
SpliceSite ss3 = new SpliceSite(1, "description");
SpliceSite ss4 = new SpliceSite(2, "description");
Assert.AreEqual(ss1, ss11);
Assert.AreNotEqual(ss1, ss2);
Assert.AreNotEqual(ss1, ss3);
Assert.AreNotEqual(ss1, ss4);
}
/// <summary>
/// Determines whether a peptide includes a splice site
/// </summary>
/// <param name="pep"></param>
/// <param name="site"></param>
/// <returns></returns>
public bool IncludesSpliceSite(SpliceSite site)
{
return(OneBasedStartResidueInProtein <= site.OneBasedBeginPosition && OneBasedEndResidueInProtein >= site.OneBasedEndPosition);
}
/// <summary>
/// Determines whether a peptide includes a splice site
/// </summary>
/// <param name="pep"></param>
/// <param name="site"></param>
/// <returns></returns>
private static bool Includes(PeptideWithSetModifications pep, SpliceSite site)
{
return(pep.OneBasedStartResidueInProtein <= site.OneBasedBeginPosition && pep.OneBasedEndResidueInProtein >= site.OneBasedEndPosition);
}
