/// <summary>
/// Convert a list of WebSpeciesFact instances
/// to a SpeciesFactList.
/// </summary>
/// <param name="userContext">
/// Information about the user that makes this method call.
/// </param>
/// <param name="webSpeciesFacts">List of WebSpeciesFact instances.</param>
/// <returns>List of SpeciesFact instances.</returns>
protected virtual SpeciesFactList GetSpeciesFacts(IUserContext userContext, List <WebSpeciesFact> webSpeciesFacts)
{
SpeciesFactList speciesFacts;
FactorList factors = CoreData.FactorManager.GetFactors(userContext);
IndividualCategoryList individualCategories = CoreData.FactorManager.GetIndividualCategories(userContext);
PeriodList periods = CoreData.FactorManager.GetPeriods(userContext);
ReferenceList references;
SpeciesFactQualityList speciesFactQualities = CoreData.SpeciesFactManager.GetSpeciesFactQualities(userContext);
List <Int32> referenceIds, taxonIds;
TaxonList taxa;
speciesFacts = null;
if (webSpeciesFacts.IsNotEmpty())
{
referenceIds = GetReferenceIds(webSpeciesFacts);
references = CoreData.ReferenceManager.GetReferences(userContext, referenceIds);
taxonIds = GetTaxonIds(webSpeciesFacts);
taxa = CoreData.TaxonManager.GetTaxa(userContext, taxonIds);
speciesFacts = new SpeciesFactList();
foreach (WebSpeciesFact webSpeciesFact in webSpeciesFacts)
{
speciesFacts.Add(GetSpeciesFact(userContext, webSpeciesFact, factors, individualCategories, periods, references, speciesFactQualities, taxa));
}
}
return(speciesFacts);
}
/// <summary>
/// Set species fact qualities for specified locale.
/// </summary>
/// <param name="speciesFactQualities">Individual categories.</param>
/// <param name="locale">Currently used locale.</param>
protected override void SetSpeciesFactQualities(SpeciesFactQualityList speciesFactQualities,
ILocale locale)
{
lock (SpeciesFactQualities)
{
SpeciesFactQualities[locale.ISOCode] = speciesFactQualities;
}
}
/// <summary>
/// Get species fact qualities for specified locale.
/// </summary>
/// <param name="locale">Currently used locale.</param>
/// <returns>Species fact qualities for specified locale.</returns>
protected virtual SpeciesFactQualityList GetSpeciesFactQualities(ILocale locale)
{
SpeciesFactQualityList speciesFactQualities = null;
if (SpeciesFactQualities.ContainsKey(locale.ISOCode))
{
speciesFactQualities = (SpeciesFactQualityList)(SpeciesFactQualities[locale.ISOCode]);
}
return(speciesFactQualities);
}
/// <summary>
/// Get species fact qualities for specified locale.
/// </summary>
/// <param name="locale">Currently used locale.</param>
/// <returns>Species fact qualities for specified locale.</returns>
protected override SpeciesFactQualityList GetSpeciesFactQualities(ILocale locale)
{
SpeciesFactQualityList speciesFactQualities = null;
lock (SpeciesFactQualities)
{
if (SpeciesFactQualities.ContainsKey(locale.ISOCode))
{
speciesFactQualities = (SpeciesFactQualityList)(SpeciesFactQualities[locale.ISOCode]);
}
}
return(speciesFactQualities);
}
/// <summary>
/// Convert a list of WebSpeciesFactQuality instances
/// to a SpeciesFactQualityList.
/// </summary>
/// <param name="userContext">
/// Information about the user that makes this method call.
/// </param>
/// <param name="webSpeciesFactQualities">List of WebSpeciesFactQuality instances.</param>
/// <returns>Species fact qualities.</returns>
private SpeciesFactQualityList GetSpeciesFactQualities(IUserContext userContext,
List <WebSpeciesFactQuality> webSpeciesFactQualities)
{
SpeciesFactQualityList speciesFactQualities;
speciesFactQualities = null;
if (webSpeciesFactQualities.IsNotEmpty())
{
speciesFactQualities = new SpeciesFactQualityList();
foreach (WebSpeciesFactQuality webSpeciesFactQuality in webSpeciesFactQualities)
{
speciesFactQualities.Add(GetSpeciesFactQuality(userContext, webSpeciesFactQuality));
}
speciesFactQualities.Sort();
}
return(speciesFactQualities);
}
/// <summary>
/// Read UserDataSet from xml file.
/// </summary>
/// <param name='fileName'>File name.</param>
/// <param name='dictionaryURI'>Path.</param>
/// <returns>The read UserDataSet.</returns>
public static UserDataSet Deserialize(String fileName, String dictionaryURI)
{
Stream stream = File.OpenRead(fileName);
BinaryFormatter formatter = new BinaryFormatter();
UserDataSet userDataSet = (UserDataSet)formatter.Deserialize(stream);
stream.Close();
stream = File.OpenRead(dictionaryURI + @"\Factors.bin");
FactorList allFactors = ((FactorList)formatter.Deserialize(stream));
stream.Close();
stream = File.OpenRead(dictionaryURI + @"\FactorTrees.bin");
FactorTreeNodeList factorTrees = ((FactorTreeNodeList)formatter.Deserialize(stream));
stream.Close();
stream = File.OpenRead(dictionaryURI + @"\SpeciesFactQualities.bin");
SpeciesFactQualityList speciesFactQualities = ((SpeciesFactQualityList)formatter.Deserialize(stream));
stream.Close();
stream = File.OpenRead(dictionaryURI + @"\Periods.bin");
PeriodList periods = ((PeriodList)formatter.Deserialize(stream));
stream.Close();
PeriodManager.InitialisePeriods(periods);
SpeciesFactManager.InitialiseSpeciesFactQualities(speciesFactQualities);
FactorManager.InitialiseAllFactors(allFactors, factorTrees);
SpeciesFactManager.InitAutomatedCalculations(userDataSet.SpeciesFacts);
return(userDataSet);
}
/// <summary>
/// Set species fact qualities for specified locale.
/// </summary>
/// <param name="speciesFactQualities">Species fact qualities.</param>
/// <param name="locale">Currently used locale.</param>
protected virtual void SetSpeciesFactQualities(SpeciesFactQualityList speciesFactQualities,
ILocale locale)
{
SpeciesFactQualities[locale.ISOCode] = speciesFactQualities;
}
/// <summary>
/// Convert a WebSpeciesFact instance into
/// an ISpeciesFact instance.
/// </summary>
/// <param name="userContext">
/// Information about the user that makes this method call.
/// </param>
/// <param name="webSpeciesFact">A WebSpeciesFact instance.</param>
/// <param name="factors">List of factors.</param>
/// <param name="individualCategories">List of individual categories.</param>
/// <param name="periods">List of periods.</param>
/// <param name="references">List of references.</param>
/// <param name="speciesFactQualities">List of species fact qualities.</param>
/// <param name="taxa">Taxa that are used in the species facts.</param>
/// <returns>An ISpeciesFact instance.</returns>
private ISpeciesFact GetSpeciesFact(IUserContext userContext,
WebSpeciesFact webSpeciesFact,
FactorList factors,
IndividualCategoryList individualCategories,
PeriodList periods,
ReferenceList references,
SpeciesFactQualityList speciesFactQualities,
TaxonList taxa)
{
IFactor factor;
IPeriod period;
ISpeciesFact speciesFact;
ITaxon host, taxon;
factor = factors.Get(webSpeciesFact.FactorId);
if (webSpeciesFact.IsHostSpecified)
{
#if EXAMINE_PROBLEM
if (!(taxa.Contains(webSpeciesFact.HostId)))
{
throw new Exception("Host with id = " + webSpeciesFact.HostId + " is not in taxon list." + webSpeciesFact.GetString());
}
#endif
host = taxa.Get(webSpeciesFact.HostId);
}
else
{
if (factor.IsTaxonomic)
{
host = CoreData.TaxonManager.GetTaxon(userContext, 0);
}
else
{
host = null;
}
}
if (webSpeciesFact.IsPeriodSpecified)
{
#if EXAMINE_PROBLEM
if (!(periods.Contains(webSpeciesFact.PeriodId)))
{
throw new Exception("Period with id = " + webSpeciesFact.PeriodId + " is not in period list." + webSpeciesFact.GetString());
}
#endif
period = periods.Get(webSpeciesFact.PeriodId);
}
else
{
period = null;
}
#if EXAMINE_PROBLEM
if (!(taxa.Contains(webSpeciesFact.TaxonId)))
{
throw new Exception("Taxon with id = " + webSpeciesFact.TaxonId + " is not in taxon list." + webSpeciesFact.GetString());
}
#endif
taxon = taxa.Get(webSpeciesFact.TaxonId);
#if EXAMINE_PROBLEM
if (!(individualCategories.Contains(webSpeciesFact.IndividualCategoryId)))
{
throw new Exception("Individual category with id = " + webSpeciesFact.IndividualCategoryId + " is not in individual category list." + webSpeciesFact.GetString());
}
if (!(speciesFactQualities.Contains(webSpeciesFact.QualityId)))
{
throw new Exception("Quality with id = " + webSpeciesFact.QualityId + " is not in quality list." + webSpeciesFact.GetString());
}
if (!(references.Contains(webSpeciesFact.ReferenceId)))
{
throw new Exception("Reference with id = " + webSpeciesFact.ReferenceId + " is not in reference list." + webSpeciesFact.GetString());
}
#endif
speciesFact = CoreData.SpeciesFactManager.GetSpeciesFact(userContext,
webSpeciesFact.Id,
taxon,
individualCategories.Get(webSpeciesFact.IndividualCategoryId),
factor,
host,
period,
webSpeciesFact.FieldValue1,
webSpeciesFact.IsFieldValue1Specified,
webSpeciesFact.FieldValue2,
webSpeciesFact.IsFieldValue2Specified,
webSpeciesFact.FieldValue3,
webSpeciesFact.IsFieldValue3Specified,
webSpeciesFact.FieldValue4,
webSpeciesFact.IsFieldValue4Specified,
webSpeciesFact.FieldValue5,
webSpeciesFact.IsFieldValue5Specified,
speciesFactQualities.Get(webSpeciesFact.QualityId),
references.Get(webSpeciesFact.ReferenceId),
webSpeciesFact.ModifiedBy,
webSpeciesFact.ModifiedDate);
return(speciesFact);
}