GenerateNewGlycoPeptide(IPeptide peptide, IGlycan glycan)
{
List <IAccumulatedGlycoPeptideMassProxy> glycos = new List <IAccumulatedGlycoPeptideMassProxy>();
foreach (int pos in FindPTMPosition.FindNGlycanSite(peptide.GetSequence()))
{
SpecialGlycoPeptide <IAccumulatedGlycanMassProxy> g =
new SpecialGlycoPeptide <IAccumulatedGlycanMassProxy>(peptide, glycan as IAccumulatedGlycanMassProxy, pos);
glycos.Add(new GeneralAccumulatedGlycoPeptideMassProxy(g));
}
return(glycos);
}
public GeneralAccumulatedGlycoPeptideMassProxy(
SpecialGlycoPeptide <IAccumulatedGlycanMassProxy> glycoPeptide)
{
calculator = UtilMass.Instance;
option = UtilMassOption.Instance;
mass = new HashSet <double>();
this.glycoPeptide = glycoPeptide;
foreach (double glycanMass in (glycoPeptide.GetGlycan()
as IAccumulatedGlycanMassProxy).GetMass())
{
foreach (double peptideMass in CalcPTMPeptideMass.GetNGlycanPeptideMass(
GetPeptide().GetSequence(), GetPosition()))
{
mass.Add(glycanMass + peptideMass);
}
mass.Add(glycanMass + calculator.CalcPeptideMass(glycoPeptide.GetPeptide(), option));
}
mass.UnionWith(CalcPTMPeptideMass.GetNonGlycanPeptideMass(GetPeptide().GetSequence(), GetPosition()));
massList = mass.ToList();
massList.Sort();
}
